RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA615351" and tax_phylum = "Chlamydiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA615351 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6253679 6253679 PRJNA615351_P_NODE_173685_length_162_cov_0.960630_g159585_i0 PRJNA615351 173685 162 0.96063 1.5562206 Candidatus Protochlamydia 282132 Bacteria Bacteria 235 1.25e-57   NTclustered gi|1691252667|emb|BX908798.2| 264201 g159585 i0 93.168 118.543209876543 161 10 99 1 1 161 1250729 1250888 Candidatus Protochlamydia amoebophila UWE25 complete genome blastn 19204 237 0.991561181434599 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia amoebophila
17173297 17173297 PRJNA615351_P_NODE_105594_length_296_cov_1.072797_g91495_i0 PRJNA615351 105594 296 1.072797 3.17547912 Candidatus Fritschea bemisiae 206681 Bacteria Bacteria 75 5.87e-9   NTclustered gi|31747861|gb|AY140910.1| 206681 g91495 i0 79.091 3.73648648648649 110 21 36 2 73 180 6821 6712 Candidatus Fritschea bemisiae strain Falk YaeL (yaeL) gene, partial cds; putative glycosylhydrolase and putative transposase genes, complete cds; 16S ribosomal RNA and 23S ribosomal RNA genes, complete sequence; putative endonuclease gene, complete cds; 5S ribosomal RNA gene, complete sequence; argynyl tRNA synthetase (argS), YjeE (yjeE), probable GTP-binding protein, DNA polymerase III epsilon subunit, and phosphoglycerate kinase (pgk) genes, complete cds; and unknown gene blastn 1106 75 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Simkaniaceae Candidatus Fritschea Candidatus Fritschea bemisiae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;