RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA615351" and tax_phylum = "Bacillariophyta"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA615351 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1871975 1871975 PRJNA615351_P_NODE_83962_length_400_cov_2.421918_g69903_i0 PRJNA615351 83962 400 2.421918 9.687672 Phaeodactylum tricornutum 2850 SAR_Eukaryotes SAR_Eukaryotes 261 5.85e-65   NTclustered gi|657012367|gb|KF302531.1| 2850 g69903 i0 84.733 20.9475 262 38 65 2 1 261 130 390 Phaeodactylum tricornutum clone C443 40S ribosomal protein mRNA, partial cds blastn 8379 261 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Phaeodactylaceae Phaeodactylum Phaeodactylum tricornutum
9524013 9524013 PRJNA615351_P_NODE_162088_length_174_cov_1.460432_g147988_i0 PRJNA615351 162088 174 1.460432 2.54115168 Naviculales sp. 2126271 SAR_Eukaryotes SAR_Eukaryotes 294 2.1999999999999998e-75   NTclustered gi|2633519340|gb|OR805654.1| 2126271 g147988 i0 97.126 199.287356321839 174 5 100 0 1 174 121143 120970 Naviculales sp. strain SZCZO2114 plastid, complete genome blastn 34676 294 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales     Naviculales sp.

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;