RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA615351" and tax_kingdom = "Thermoproteati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Thermoproteati · 3 ✖

bioproject 1

  • PRJNA615351 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12629019 12629019 PRJNA615351_P_NODE_170850_length_164_cov_2.620155_g156750_i0 PRJNA615351 170850 164 2.620155 4.2970542 Archaea 2157 Archaea Archaea 303 3.42e-78   NTclustered gi|156106317|gb|EU098073.1| 29281 g156750 i0 100 100 164 0 100 0 1 164 332 495 Uncultured crenarchaeote clone Gua2_12 16S ribosomal RNA gene, partial sequence blastn 16400 303 1 Archaea   Thermoproteati Thermoproteota         uncultured crenarchaeote
19722203 19722203 PRJNA615351_P_NODE_147876_length_193_cov_1.734177_g133776_i0 PRJNA615351 147876 193 1.734177 3.34696161 uncultured crenarchaeote 29281 Archaea Archaea 318 1.4899999999999995e-82   NTclustered gi|42557759|emb|AJ627422.1| 29281 g133776 i0 96.373 8.5699481865285 193 7 100 0 1 193 40846 40654 Uncultured crenarchaeote genomic fragment 54d9 blastn 1654 318 1 Archaea   Thermoproteati Thermoproteota         uncultured crenarchaeote
24821784 24821784 PRJNA615351_P_NODE_153340_length_185_cov_1.853333_g139240_i0 PRJNA615351 153340 185 1.853333 3.42866605 Vulcanisaeta moutnovskia 985052 Archaea Archaea 52.8 0.016   NTclustered gi|323706731|gb|CP002529.1| 985053 g139240 i0 100 0.151351351351351 28 0 15 0 154 181 336100 336127 Vulcanisaeta moutnovskia 768-28, complete genome blastn 28 52.8 1 Archaea   Thermoproteati Thermoproteota Thermoprotei Thermoproteales Thermoproteaceae Vulcanisaeta Vulcanisaeta moutnovskia

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;