contig_metadata
12 rows where analysis = "blastn", bioproject = "PRJNA615351" and tax_kingdom = "Fusobacteriati"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 8249109 | 8249109 | PRJNA615351_P_NODE_76047_length_453_cov_2.863636_g62042_i0 | PRJNA615351 | 76047 | 453 | 2.863636 | 12.97227108 | Leptotrichia wadei | 157687 | Bacteria | Bacteria | 756 | 0 | NTclustered | gi|1708575239|dbj|AP019834.1| | 157687 | g62042 | i0 | 98.152 | 318.437086092715 | 433 | 8 | 96 | 0 | 21 | 453 | 221494 | 221926 | Leptotrichia wadei JMUB3933 DNA, complete genome | blastn | 144252 | 756 | 1 | Bacteria | Fusobacteriati | Fusobacteriota | Fusobacteriia | Fusobacteriales | Leptotrichiaceae | Leptotrichia | Leptotrichia wadei | ||
| 14624536 | 14624536 | PRJNA615351_P_NODE_176812_length_159_cov_1.016129_g162712_i0 | PRJNA615351 | 176812 | 159 | 1.016129 | 1.61564511 | Leptotrichia sp. oral taxon 212 | 712357 | Bacteria | Bacteria | 281 | 1.54e-71 | NTclustered | gi|922689899|gb|CP012410.1| | 712357 | g162712 | i0 | 98.734 | 64.3207547169811 | 158 | 2 | 99 | 0 | 2 | 159 | 53161 | 53004 | Leptotrichia sp. oral taxon 212 strain W10393, complete genome | blastn | 10227 | 281 | 1 | Bacteria | Fusobacteriati | Fusobacteriota | Fusobacteriia | Fusobacteriales | Leptotrichiaceae | Leptotrichia | Leptotrichia sp. oral taxon 212 | ||
| 15898533 | 15898533 | PRJNA615351_P_NODE_168053_length_167_cov_2.106061_g153953_i0 | PRJNA615351 | 168053 | 167 | 2.106061 | 3.51712187 | Fusobacterium polymorphum | 76857 | Bacteria | Bacteria | 56.5 | 0.001 | NTclustered | gi|2706067283|gb|CP077110.1| | 76857 | g153953 | i0 | 100 | 0.179640718562874 | 30 | 0 | 18 | 0 | 78 | 107 | 2236498 | 2236527 | Fusobacterium polymorphum strain KCOM1278 chromosome, complete genome | blastn | 30 | 56.5 | 1 | Bacteria | Fusobacteriati | Fusobacteriota | Fusobacteriia | Fusobacteriales | Fusobacteriaceae | Fusobacterium | Fusobacterium polymorphum | ||
| 18447628 | 18447628 | PRJNA615351_P_NODE_150875_length_188_cov_6.483660_g136775_i0 | PRJNA615351 | 150875 | 188 | 6.48366 | 12.1892808 | Leptotrichia sp. oral taxon 212 | 712357 | Bacteria | Bacteria | 342 | 8.539999999999999e-90 | NTclustered | gi|922689899|gb|CP012410.1| | 712357 | g136775 | i0 | 99.468 | 435.659574468085 | 188 | 1 | 100 | 0 | 1 | 188 | 53028 | 52841 | Leptotrichia sp. oral taxon 212 strain W10393, complete genome | blastn | 81904 | 342 | 1 | Bacteria | Fusobacteriati | Fusobacteriota | Fusobacteriia | Fusobacteriales | Leptotrichiaceae | Leptotrichia | Leptotrichia sp. oral taxon 212 | ||
| 18447696 | 18447696 | PRJNA615351_P_NODE_175575_length_160_cov_1.280000_g161475_i0 | PRJNA615351 | 175575 | 160 | 1.28 | 2.048 | Leptotrichia wadei | 157687 | Bacteria | Bacteria | 296 | 5.55e-76 | NTclustered | gi|1708582457|dbj|AP019841.1| | 157687 | g161475 | i0 | 100 | 29.84375 | 160 | 0 | 100 | 0 | 1 | 160 | 2247451 | 2247610 | Leptotrichia wadei JMUB3936 DNA, complete genome | blastn | 4775 | 296 | 1 | Bacteria | Fusobacteriati | Fusobacteriota | Fusobacteriia | Fusobacteriales | Leptotrichiaceae | Leptotrichia | Leptotrichia wadei | ||
| 19722113 | 19722113 | PRJNA615351_P_NODE_119216_length_252_cov_2.732719_g105116_i0 | PRJNA615351 | 119216 | 252 | 2.732719 | 6.88645188 | Fusobacterium mortiferum | 850 | Bacteria | Bacteria | 158 | 4.71e-34 | NTclustered | gi|1370540179|gb|CP028102.1| | 469616 | g105116 | i0 | 82.514 | 14.5119047619048 | 183 | 29 | 72 | 3 | 7 | 187 | 2678054 | 2677873 | Fusobacterium mortiferum ATCC 9817 chromosome, complete genome | blastn | 3657 | 158 | 1 | Bacteria | Fusobacteriati | Fusobacteriota | Fusobacteriia | Fusobacteriales | Fusobacteriaceae | Fusobacterium | Fusobacterium mortiferum | ||
| 19722593 | 19722593 | PRJNA615351_P_NODE_92216_length_354_cov_1.711599_g78131_i0 | PRJNA615351 | 92216 | 354 | 1.711599 | 6.05906046 | Fusobacterium polymorphum | 76857 | Bacteria | Bacteria | 126 | 1.95e-24 | NTclustered | gi|2706407748|gb|CP077116.1| | 76857 | g78131 | i0 | 93.023 | 1.8728813559322 | 86 | 6 | 24 | 0 | 267 | 352 | 185313 | 185398 | Fusobacterium polymorphum strain KCOM1257 chromosome, complete genome | blastn | 663 | 126 | 1 | Bacteria | Fusobacteriati | Fusobacteriota | Fusobacteriia | Fusobacteriales | Fusobacteriaceae | Fusobacterium | Fusobacterium polymorphum | ||
| 20997749 | 20997749 | PRJNA615351_P_NODE_120237_length_249_cov_5.065421_g106137_i0 | PRJNA615351 | 120237 | 249 | 5.065421 | 12.61289829 | Leptotrichia hongkongensis | 554406 | Bacteria | Bacteria | 414 | 2.49e-111 | NTclustered | gi|1708587163|dbj|AP019846.1| | 554406 | g106137 | i0 | 97.154 | 459.923694779116 | 246 | 6 | 99 | 1 | 1 | 245 | 71147 | 71392 | Leptotrichia hongkongensis JMUB5056 DNA, complete genome | blastn | 114521 | 414 | 1 | Bacteria | Fusobacteriati | Fusobacteriota | Fusobacteriia | Fusobacteriales | Leptotrichiaceae | Leptotrichia | Leptotrichia hongkongensis | ||
| 22272626 | 22272626 | PRJNA615351_P_NODE_109898_length_280_cov_4.379592_g95799_i0 | PRJNA615351 | 109898 | 280 | 4.379592 | 12.2628576 | Leptotrichia shahii | 157691 | Bacteria | Bacteria | 368 | 2.26e-97 | NTclustered | gi|1708568515|dbj|AP019827.1| | 157691 | g95799 | i0 | 90.068 | 110.49642857142901 | 292 | 17 | 100 | 6 | 1 | 280 | 102569 | 102278 | Leptotrichia shahii JCM16776 DNA, complete genome | blastn | 30939 | 368 | 1 | Bacteria | Fusobacteriati | Fusobacteriota | Fusobacteriia | Fusobacteriales | Leptotrichiaceae | Leptotrichia | Leptotrichia shahii | ||
| 22273148 | 22273148 | PRJNA615351_P_NODE_97478_length_329_cov_1.496599_g83383_i0 | PRJNA615351 | 97478 | 329 | 1.496599 | 4.92381071 | Sneathia vaginalis | 187101 | Bacteria | Bacteria | 52.8 | 0.031 | NTclustered | gi|2831218648|gb|CP170997.1| | 187101 | g83383 | i0 | 100 | 0.0851063829787234 | 28 | 0 | 9 | 0 | 227 | 254 | 1194011 | 1193984 | Sneathia vaginalis strain WGS1539 chromosome, complete genome | blastn | 28 | 52.8 | 1 | Bacteria | Fusobacteriati | Fusobacteriota | Fusobacteriia | Fusobacteriales | Leptotrichiaceae | Sneathia | Sneathia vaginalis | ||
| 23548042 | 23548042 | PRJNA615351_P_NODE_123999_length_240_cov_1.448780_g109899_i0 | PRJNA615351 | 123999 | 240 | 1.44878 | 3.477072 | Fusobacterium polymorphum | 76857 | Bacteria | Bacteria | 60.2 | 1.29e-4 | NTclustered | gi|2706041172|gb|CP056018.1| | 76857 | g109899 | i0 | 97.143 | 0.729166666666667 | 35 | 1 | 15 | 0 | 193 | 227 | 1340569 | 1340603 | Fusobacterium polymorphum strain SB006 chromosome, complete genome | blastn | 175 | 60.2 | 1 | Bacteria | Fusobacteriati | Fusobacteriota | Fusobacteriia | Fusobacteriales | Fusobacteriaceae | Fusobacterium | Fusobacterium polymorphum | ||
| 23548064 | 23548064 | PRJNA615351_P_NODE_131599_length_222_cov_3.288770_g117499_i0 | PRJNA615351 | 131599 | 222 | 3.28877 | 7.3010694 | uncultured Ilyobacter sp. | 544433 | Bacteria | Bacteria | 52.8 | 0.02 | NTclustered | gi|2814788377|emb|OY764057.2| | 544433 | g117499 | i0 | 100 | 0.126126126126126 | 28 | 0 | 13 | 0 | 139 | 166 | 1703779 | 1703752 | MAG: uncultured Ilyobacter sp. isolate b6197fd5-c757-4c76-928f-f28f0df2880b genome assembly, chromosome: 1 | blastn | 28 | 52.8 | 1 | Bacteria | Fusobacteriati | Fusobacteriota | Fusobacteriia | Fusobacteriales | Fusobacteriaceae | Ilyobacter | uncultured Ilyobacter sp. |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;