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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA615351" and tax_clade = "delta/epsilon subdivisions"

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tax_superkingdom 1

tax_clade 1

  • delta/epsilon subdivisions · 3 ✖

bioproject 1

  • PRJNA615351 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1149912 1149912 PRJNA615351_P_NODE_107781_length_287_cov_7.170635_g93682_i0 PRJNA615351 107781 287 7.170635 20.57972245 Bacteria 2 Bacteria Bacteria 473 4.78e-129   NTclustered gi|146429400|gb|EF220216.1| 34034 g93682 i0 97.143 96.9163763066202 280 8 98 0 8 287 11 290 Uncultured delta proteobacterium clone FB-1_C04 16S ribosomal RNA gene, partial sequence blastn 27815 473 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
15178365 15178365 PRJNA615351_P_NODE_170872_length_164_cov_2.480620_g156772_i0 PRJNA615351 170872 164 2.48062 4.0682168 Thermodesulfobacteriota 200940 Bacteria Bacteria 152 1.31e-32   NTclustered gi|1722470586|gb|CP042467.1| 2600177 g156772 i0 84.177 355.042682926829 158 23 96 2 4 160 702308 702464 Microvenator marinus strain V1718 chromosome, complete genome blastn 58227 152 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria Bradymonadales Microvenatoraceae Microvenator Microvenator marinus
22272784 22272784 PRJNA615351_P_NODE_158118_length_179_cov_1.500000_g144018_i0 PRJNA615351 158118 179 1.5 2.685 uncultured delta proteobacterium 34034 Bacteria Bacteria 52.8 0.015   NTclustered gi|2874253659|emb|OY969087.1| 34034 g144018 i0 100 0.156424581005587 28 0 16 0 36 63 7440398 7440371 MAG: uncultured delta proteobacterium isolate MFD01721.bin.c.1 genome assembly, chromosome: 1 blastn 28 52.8 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;