RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA615175" and tax_superkingdom = "Archaea"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_kingdom 2

tax_superkingdom 1

  • Archaea · 4 ✖

bioproject 1

  • PRJNA615175 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8248393 8248393 PRJNA615175_P_NODE_8547_length_510_cov_2.466819_g8379_i0 PRJNA615175 8547 510 2.466819 12.5807769 uncultured archaeon 115547 Archaea Archaea 859 0   NTclustered gi|388254672|gb|JQ768092.1| 115547 g8379 i0 97.059 62.0039215686275 510 15 100 0 1 510 29208 29717 Uncultured archaeon clone 02j05, complete sequence blastn 31622 859 1 Archaea               uncultured archaeon
13349064 13349064 PRJNA615175_P_NODE_21471_length_298_cov_1.368889_g21303_i0 PRJNA615175 21471 298 1.368889 4.07928922 Halalkalicoccus jeotgali 413810 Archaea Archaea 398 3.0899999999999995e-106   NTclustered gi|299126090|gb|CP002063.1| 795797 g21303 i0 91.379 0.973154362416107 290 25 97 0 1 290 66675 66386 Halalkalicoccus jeotgali B3 plasmid 1, complete sequence blastn 290 398 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halococcaceae Halalkalicoccus Halalkalicoccus jeotgali
24101620 24101620 PRJNA615175_P_NODE_20779_length_304_cov_1.264069_g20611_i0 PRJNA615175 20779 304 1.264069 3.84276976 Methanobrevibacter 2172 Archaea Archaea 551 2.289999999999999e-152   NTclustered gi|968564921|gb|CP011266.1| 230361 g20611 i0 99.342 136.411184210526 304 2 100 0 1 304 542581 542278 Methanobrevibacter millerae strain SM9, complete genome blastn 41469 551 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter millerae
25376118 25376118 PRJNA615175_P_NODE_10280_length_457_cov_2.497396_g10112_i0 PRJNA615175 10280 457 2.497396 11.41309972 Candidatus Nitrosocosmicus 1826864 Archaea Archaea 822 0   NTclustered gi|937513727|gb|CP012850.1| 1353260 g10112 i0 99.125 99.0065645514223 457 4 100 0 1 457 850189 850645 Candidatus Nitrosocosmicus oleophilus strain MY3, complete genome blastn 45246 828 0.992753623188406 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales Nitrososphaeraceae Candidatus Nitrosocosmicus Candidatus Nitrosocosmicus oleophilus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;