RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA615175" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA615175 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1149875 1149875 PRJNA615175_P_NODE_6581_length_593_cov_4.526923_g6416_i0 PRJNA615175 6581 593 4.526923 26.84465339 Hyaloperonospora 184462 SAR_Eukaryotes SAR_Eukaryotes 1046 0   NTclustered gi|33520229|gb|AY273974.1| 162125 g6416 i0 98.482 97.7537942664418 593 9 100 0 1 593 657 65 Hyaloperonospora brassicae large subunit ribosomal RNA gene, partial sequence blastn 57968 1051 0.995242626070409 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Hyaloperonospora Hyaloperonospora brassicae
19001292 19001292 PRJNA615175_P_NODE_7995_length_530_cov_5.520788_g7829_i0 PRJNA615175 7995 530 5.520788 29.2601764 Hyaloperonospora 184462 SAR_Eukaryotes SAR_Eukaryotes 881 0   NTclustered gi|33520229|gb|AY273974.1| 162125 g7829 i0 96.958 97.9584905660377 526 15 99 1 1 526 657 133 Hyaloperonospora brassicae large subunit ribosomal RNA gene, partial sequence blastn 51918 881 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Hyaloperonospora Hyaloperonospora brassicae
20997429 20997429 PRJNA615175_P_NODE_35897_length_235_cov_2.302469_g35729_i0 PRJNA615175 35897 235 2.302469 5.41080215 Saprolegnia ferax 4770 SAR_Eukaryotes SAR_Eukaryotes 150 7.26e-32   NTclustered gi|50261276|ref|NC_005984.1| 4770 g35729 i0 89.744 48.8297872340426 117 12 50 0 99 215 31484 31368 Saprolegnia ferax mitochondrion, complete genome blastn 11475 150 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia ferax
24821451 24821451 PRJNA615175_P_NODE_9080_length_492_cov_3.169451_g8912_i0 PRJNA615175 9080 492 3.169451 15.59369892 Phytophthora quercina 78236 SAR_Eukaryotes SAR_Eukaryotes 250 1.59e-61   NTclustered gi|2248513480|ref|NC_063806.1| 78236 g8912 i0 80.059 68.5670731707317 341 64 69 4 29 367 21884 22222 Phytophthora quercina isolate ST_201908082014 mitochondrion, complete genome blastn 33735 250 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora quercina

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;