RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA615175" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA615175 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
20997254 20997254 PRJNA615175_P_NODE_26437_length_260_cov_2.470588_g26269_i0 PRJNA615175 26437 260 2.470588 6.4235288 Caenorhabditis briggsae 6238 Nematoda Nematoda 178 3.749999999999999e-40   NTclustered gi|268553132|ref|XM_002634504.1| 6238 g26269 i0 79.07 88.0307692307692 258 54 99 0 1 258 381 124 Caenorhabditis briggsae Protein CBR-RPS-14 (Cbr-rps-14), partial mRNA blastn 22888 178 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
23547302 23547302 PRJNA615175_P_NODE_14879_length_366_cov_4.324232_g14711_i0 PRJNA615175 14879 366 4.324232 15.82668912 Caenorhabditis remanei 31234 Nematoda Nematoda 235 3.2099999999999996e-57   NTclustered gi|2445393344|ref|XM_003117517.2| 31234 g14711 i0 78.495 50.2568306010929 372 71 100 9 1 366 980 612 Caenorhabditis remanei uncharacterized protein (GCK72_024033), partial mRNA blastn 18394 235 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis remanei

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;