RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA615175" and tax_phylum = "Evosea"

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tax_superkingdom 1

tax_phylum 1

  • Evosea · 7 ✖

tax_clade 1

bioproject 1

  • PRJNA615175 · 7 ✖

analysis 1

  • blastn · 7 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
594966 594966 PRJNA615175_P_NODE_24561_length_274_cov_2.865672_g24393_i0 PRJNA615175 24561 274 2.865672 7.85194128 Heterostelium album 2086695 Evosea other_Eukaryota 54.7 0.007   NTclustered gi|1160554294|ref|XM_020572972.1| 670386 g24393 i0 100 0.105839416058394 29 0 11 0 33 61 5714 5686 Polysphondylium pallidum PN500 hypothetical protein (tipC), partial mRNA blastn 29 54.7 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album
595127 595127 PRJNA615175_P_NODE_32681_length_244_cov_3.304094_g32513_i0 PRJNA615175 32681 244 3.304094 8.06198936 Soliformovum expulsum 435423 Evosea other_Eukaryota 350 6.969999999999998e-92   NTclustered gi|260909293|gb|FJ766479.1| 435423 g32513 i0 92.369 97.3606557377049 249 13 100 3 1 244 1501 1748 Soliformovum expulsum culture-collection ATCC:48083 clone pool B 18S ribosomal RNA gene, partial sequence blastn 23756 350 1 Eukaryota Amoebozoa   Evosea Variosea Fractovitellida Soliformoviidae Soliformovum Soliformovum expulsum
4422762 4422762 PRJNA615175_P_NODE_7804_length_538_cov_3.617204_g7638_i0 PRJNA615175 7804 538 3.617204 19.46055752 Soliformovum irregulare 435424 Evosea other_Eukaryota 795 0   NTclustered gi|146448863|gb|EF513199.1| 435424 g7638 i0 93.309 71.2732342007435 538 36 100 0 1 538 386 923 Soliformovum irregulare elongation factor 1A (EF1A) gene, partial cds blastn 38345 795 1 Eukaryota Amoebozoa   Evosea Variosea Fractovitellida Soliformoviidae Soliformovum Soliformovum irregulare
10799176 10799176 PRJNA615175_P_NODE_2269_length_1019_cov_2.512685_g2151_i0 PRJNA615175 2269 1019 2.512685 25.604260150000002 Physarum polycephalum 5791 Evosea other_Eukaryota 856 0   NTclustered gi|3209|emb|X14502.1| 5791 g2151 i0 82.68 0.951913640824338 970 162 95 6 1 967 1060 94 Physarum polycephalum plasmodial specific LAV1-2 mRNA blastn 970 856 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Physarum Physarum polycephalum
13348972 13348972 PRJNA615175_P_NODE_1671_length_1164_cov_3.054079_g1570_i0 PRJNA615175 1671 1164 3.054079 35.54947956 Heterostelium album 2086695 Evosea other_Eukaryota 743 0   NTclustered gi|1160565652|ref|XM_020580448.1| 670386 g1570 i0 79.25 85.0274914089347 1094 205 93 18 39 1118 1227 142 Polysphondylium pallidum PN500 S-adenosyl-L-homocysteine hydrolase (sahA), partial mRNA blastn 98972 743 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album
19721468 19721468 PRJNA615175_P_NODE_2036_length_1069_cov_18.300201_g1922_i0 PRJNA615175 2036 1069 18.300201 195.62914869 Didymium spongiosum 289992 Evosea other_Eukaryota 870 0   NTclustered gi|2161226356|gb|MZ313554.1| 289992 g1922 i0 81.876 20.2432179607109 1109 129 100 62 1 1069 8173 7097 Mucilago crustacea 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 21640 870 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Didymiaceae Didymium Didymium spongiosum
22272206 22272206 PRJNA615175_P_NODE_298_length_2039_cov_2.776195_g274_i0 PRJNA615175 298 2039 2.776195 56.60661605 Didymium iridis 5793 Evosea other_Eukaryota 2538 0   NTclustered gi|2687|emb|X60210.1| 5793 g274 i0 89.453 21.4271701814615 2048 165 99 33 12 2039 843 2859 D.iridis LSU rRNA gene blastn 43690 2538 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Didymiaceae Didymium Didymium iridis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;