RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA615175" and tax_phylum = "Cnidaria"

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tax_superkingdom 1

tax_phylum 1

  • Cnidaria · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA615175 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1149814 1149814 PRJNA615175_P_NODE_1821_length_1126_cov_16.370370_g1713_i0 PRJNA615175 1821 1126 16.37037 184.3303662 Metazoa 33208 Cnidaria other_Eukaryota 135 1.11e-26   NTclustered gi|605060084|gb|KF874224.1| 109801 g1713 i0 86.885 11.234458259325 122 14 11 2 1005 1126 233 352 Parvicapsula minibicornis 28S ribosomal RNA gene, partial sequence blastn 12650 135 1 Eukaryota Opisthokonta Metazoa Cnidaria Myxozoa Bivalvulida Parvicapsulidae Parvicapsula Parvicapsula minibicornis
3146043 3146043 PRJNA615175_P_NODE_5483_length_654_cov_11.079174_g5319_i0 PRJNA615175 5483 654 11.079174 72.45779796 Montipora capricornis 246305 Cnidaria other_Eukaryota 54.7 0.018   NTclustered gi|2812160882|ref|XM_068893302.1| 246305 g5319 i0 100 0.0443425076452599 29 0 4 0 444 472 1238 1210 PREDICTED: Montipora capricornis PE-PGRS family protein PE_PGRS16-like (LOC138046707), mRNA blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Cnidaria Anthozoa Scleractinia Acroporidae Montipora Montipora capricornis
20276220 20276220 PRJNA615175_P_NODE_21036_length_301_cov_5.618421_g20868_i0 PRJNA615175 21036 301 5.618421 16.91144721 Symplectoscyphus 308613 Cnidaria other_Eukaryota 91.6 5.94e-14   NTclustered gi|1006165264|gb|KT190774.1| 308614 g20868 i0 80.159 1.82059800664452 126 21 41 4 146 269 2058 1935 Symplectoscyphus tricuspidatus voucher MBM240558 clone STNB12P212-1, P213-1 28S ribosomal RNA gene, partial sequence blastn 548 91.6 1 Eukaryota Opisthokonta Metazoa Cnidaria Hydrozoa Leptothecata Sertulariidae Symplectoscyphus Symplectoscyphus tricuspidatus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;