RNAquarium Metadata Server
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contig_metadata

10 rows where analysis = "blastn", bioproject = "PRJNA615175" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 10 ✖

bioproject 1

  • PRJNA615175 · 10 ✖

analysis 1

  • blastn · 10 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
595178 595178 PRJNA615175_P_NODE_35861_length_236_cov_2.822086_g35693_i0 PRJNA615175 35861 236 2.822086 6.66012296 Fusobacterium pseudoperiodonticum 2663009 Bacteria Bacteria 370 5.14e-98   NTclustered gi|2705022034|gb|CP084128.1| 2663009 g35693 i0 94.915 111.771186440678 236 12 100 0 1 236 390264 390029 Fusobacterium pseudoperiodonticum strain KCOM1322 chromosome, complete genome blastn 26378 370 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium pseudoperiodonticum
9523142 9523142 PRJNA615175_P_NODE_12128_length_413_cov_1.358824_g11960_i0 PRJNA615175 12128 413 1.358824 5.61194312 Sneathia vaginalis 187101 Bacteria Bacteria 425 2.03e-114   NTclustered gi|808076794|gb|CP011280.1| 187101 g11960 i0 86.284 58.319612590799 401 44 96 9 3 397 113132 113527 Sneathia vaginalis strain SN35 chromosome, complete genome blastn 24086 425 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Sneathia Sneathia vaginalis
10799199 10799199 PRJNA615175_P_NODE_2449_length_984_cov_5.923161_g2325_i0 PRJNA615175 2449 984 5.923161 58.28390424 Leptotrichia hongkongensis 554406 Bacteria Bacteria 1788 0   NTclustered gi|1708587163|dbj|AP019846.1| 554406 g2325 i0 99.492 4 984 4 100 1 1 984 1535171 1536153 Leptotrichia hongkongensis JMUB5056 DNA, complete genome blastn 3936 1788 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia hongkongensis
13349086 13349086 PRJNA615175_P_NODE_22991_length_286_cov_1.446009_g22823_i0 PRJNA615175 22991 286 1.446009 4.13558574 Fusobacterium pseudoperiodonticum 2663009 Bacteria Bacteria 496 1.02e-135   NTclustered gi|1276705688|gb|CP024698.1| 2663009 g22823 i0 97.902 24.8426573426573 286 6 100 0 1 286 400098 400383 Fusobacterium pseudoperiodonticum strain KCOM 1283 chromosome, complete genome blastn 7105 496 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium pseudoperiodonticum
15178173 15178173 PRJNA615175_P_NODE_18012_length_329_cov_2.914062_g17844_i0 PRJNA615175 18012 329 2.914062 9.58726398 Fusobacterium 848 Bacteria Bacteria 603 6.819999999999999e-168   NTclustered gi|1370537877|gb|CP028108.1| 860 g17844 i0 99.696 100 329 1 100 0 1 329 2375081 2375409 Fusobacterium periodonticum strain 2_1_31 chromosome, complete genome blastn 32900 608 0.991776315789474 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium periodonticum
18446997 18446997 PRJNA615175_P_NODE_275_length_2092_cov_7.682516_g251_i0 PRJNA615175 275 2092 7.682516 160.71823472 Leptotrichia sp. oral taxon 212 712357 Bacteria Bacteria 2689 0   NTclustered gi|922689899|gb|CP012410.1| 712357 g251 i0 90.148 4.87667304015296 2091 172 99 21 19 2092 68285 66212 Leptotrichia sp. oral taxon 212 strain W10393, complete genome blastn 10202 2689 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia sp. oral taxon 212
19721459 19721459 PRJNA615175_P_NODE_1976_length_1085_cov_4.916008_g1862_i0 PRJNA615175 1976 1085 4.916008 53.3386868 Fusobacterium nucleatum 851 Bacteria Bacteria 1930 0   NTclustered gi|2704987509|gb|CP077135.1| 851 g1862 i0 98.802 106.119815668203 1085 12 100 1 1 1085 731954 733037 Fusobacterium nucleatum strain KCOM3154 chromosome, complete genome blastn 115140 1930 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium nucleatum
20997320 20997320 PRJNA615175_P_NODE_30557_length_247_cov_1.758621_g30389_i0 PRJNA615175 30557 247 1.758621 4.34379387 Fusobacterium polymorphum 76857 Bacteria Bacteria 457 4.05e-124   NTclustered gi|2706496642|gb|CP084152.1| 76857 g30389 i0 100 476.846153846154 247 0 100 0 1 247 2460440 2460686 Fusobacterium polymorphum strain KCOM2594 chromosome, complete genome blastn 117781 457 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium polymorphum
22272113 22272113 PRJNA615175_P_NODE_24978_length_271_cov_2.333333_g24810_i0 PRJNA615175 24978 271 2.333333 6.32333243 Fusobacterium canifelinum 285729 Bacteria Bacteria 496 9.55e-136   NTclustered gi|1948622963|gb|CP066022.1| 285729 g24810 i0 99.631 28.0184501845018 271 1 100 0 1 271 1006598 1006328 Fusobacterium canifelinum strain FDAARGOS_999 chromosome, complete genome blastn 7593 496 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium canifelinum
24821432 24821432 PRJNA615175_P_NODE_8340_length_517_cov_2.761261_g8172_i0 PRJNA615175 8340 517 2.761261 14.27571937 Cetobacterium somerae 188913 Bacteria Bacteria 54.7 0.014   NTclustered gi|2201062199|gb|CP092521.1| 188913 g8172 i0 100 0.112185686653772 29 0 6 0 16 44 63038 63010 Cetobacterium somerae strain CS2105-BJ plasmid unnamed2, complete sequence blastn 58 54.7 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium somerae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;