RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

19 rows where analysis = "blastn", bioproject = "PRJNA615175" and tax_clade = "Discoba"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Discoba · 19 ✖

bioproject 1

  • PRJNA615175 · 19 ✖

analysis 1

  • blastn · 19 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
594715 594715 PRJNA615175_P_NODE_101_length_2719_cov_5.268330_g95_i0 PRJNA615175 101 2719 5.26833 143.2458927 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 824 0   NTclustered gi|11466174|ref|NC_002573.1| 5762 g95 i0 79.043 30.874586244943 1212 247 44 7 2 1209 10210 11418 Naegleria gruberi mitochondrion, complete genome blastn 83948 824 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
594819 594819 PRJNA615175_P_NODE_161_length_2445_cov_15.518128_g143_i0 PRJNA615175 161 2445 15.518128 379.4182296 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 1520 0   NTclustered gi|290980684|ref|XM_002673016.1| 5762 g143 i0 78.635 68.9918200408998 2373 449 96 48 76 2419 2431 88 Naegleria gruberi uncharacterized protein (NAEGRDRAFT_56300), mRNA blastn 168685 1520 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
595210 595210 PRJNA615175_P_NODE_5481_length_654_cov_17.320138_g5317_i0 PRJNA615175 5481 654 17.320138 113.27370252 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 412 2.5899999999999995e-110   NTclustered gi|290986090|ref|XM_002675712.1| 5762 g5317 i0 83.04 18.8042813455657 454 77 69 0 19 472 590 137 Naegleria gruberi ARF/SAR family small GTPase (NAEGRDRAFT_83201), mRNA blastn 12298 412 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
1871160 1871160 PRJNA615175_P_NODE_4262_length_751_cov_16.035398_g4103_i0 PRJNA615175 4262 751 16.035398 120.42583898 Naegleria fowleri 5763 Heterolobosea other_Eukaryota 496 2.89e-135   NTclustered gi|2031943822|emb|OD958321.1| 5763 g4103 i0 80.147 1.81091877496671 680 121 89 13 2 673 7356 6683 Naegleria fowleri Karachi_NF001 strain blastn 1360 496 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri
6973320 6973320 PRJNA615175_P_NODE_2126_length_1050_cov_134.233367_g2009_i0 PRJNA615175 2126 1050 134.233367 1409.4503535 Naegleria fowleri 5763 Heterolobosea other_Eukaryota 547 1.1199999999999999e-150   NTclustered gi|2124392890|ref|XM_044712220.1| 5763 g2009 i0 78.251 2.76857142857143 869 178 82 11 92 956 39 900 Naegleria fowleri uncharacterized protein (FDP41_008374), partial mRNA blastn 2907 547 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri
7527649 7527649 PRJNA615175_P_NODE_7746_length_540_cov_8.533191_g7580_i0 PRJNA615175 7746 540 8.533191 46.0792314 Naegleria 5761 Heterolobosea other_Eukaryota 353 1.3e-92   NTclustered gi|290978297|ref|XM_002671827.1| 5762 g7580 i0 82.1 4.64074074074074 419 70 77 5 125 540 472 56 Naegleria gruberi uncharacterized protein (NAEGRDRAFT_83282), mRNA blastn 2506 355 0.994366197183099 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
8247902 8247902 PRJNA615175_P_NODE_127_length_2593_cov_319.346429_g115_i0 PRJNA615175 127 2593 319.346429 8280.65290397 Acrasis kona 1008807 Heterolobosea other_Eukaryota 593 3.5599999999999995e-164   NTclustered gi|756877081|ref|NC_026286.1| 1008807 g115 i0 75.261 28.9325106054763 1435 257 71 76 503 1888 657 2042 Acrasis kona culture-collection ATCC:MYA-3509 mitochondrion, complete genome blastn 75022 593 1 Eukaryota Discoba   Heterolobosea     Acrasidae Acrasis Acrasis kona
9523278 9523278 PRJNA615175_P_NODE_19768_length_312_cov_4.041841_g19600_i0 PRJNA615175 19768 312 4.041841 12.61054392 Allovahlkampfia sp. 1874883 Heterolobosea other_Eukaryota 468 2.44e-127   NTclustered gi|2651357779|gb|PP174295.1| 1874883 g19600 i0 93.91 21.9134615384615 312 15 99 3 3 312 4010 4319 Allovahlkampfia sp. isolate P10 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 6837 468 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp.
10078273 10078273 PRJNA615175_P_NODE_12368_length_407_cov_3.688623_g12200_i0 PRJNA615175 12368 407 3.688623 15.01269561 Naegleria 5761 Heterolobosea other_Eukaryota 233 1.3e-56   NTclustered gi|2119444727|ref|XM_044705325.1| 5763 g12200 i0 80.392 29.044226044226 306 60 75 0 62 367 16 321 Naegleria fowleri uncharacterized protein (FDP41_002160), partial mRNA blastn 11821 233 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri
12074070 12074070 PRJNA615175_P_NODE_12430_length_406_cov_2.672673_g12262_i0 PRJNA615175 12430 406 2.672673 10.85105238 Parabodo caudatus 351713 Euglenozoa other_Eukaryota 713 0   NTclustered gi|20331092|gb|AY028450.1| 351713 g12262 i0 100 92.4926108374384 386 0 95 0 1 386 386 1 Bodo caudatus 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 37552 713 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Parabodonida   Parabodo Parabodo caudatus
12074124 12074124 PRJNA615175_P_NODE_15890_length_353_cov_2.467857_g15722_i0 PRJNA615175 15890 353 2.467857 8.71153521 Naegleria fowleri 5763 Heterolobosea other_Eukaryota 300 1.08e-76   NTclustered gi|2031944901|emb|OD958399.1| 5763 g15722 i0 85.085 109.750708215297 295 43 84 1 1 295 7579 7286 Naegleria fowleri Karachi_NF001 strain blastn 38742 300 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri
12074351 12074351 PRJNA615175_P_NODE_30490_length_247_cov_7.298851_g30322_i0 PRJNA615175 30490 247 7.298851 18.02816197 Naegleria fowleri 5763 Heterolobosea other_Eukaryota 126 1.2999999999999998e-24   NTclustered gi|2031938990|emb|OD957471.1| 5763 g30322 i0 86.957 20.8097165991903 115 12 46 3 37 150 15071 15183 Naegleria fowleri Karachi_NF001 strain blastn 5140 126 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri
15897610 15897610 PRJNA615175_P_NODE_10233_length_458_cov_10.929870_g10065_i0 PRJNA615175 10233 458 10.92987 50.0588046 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 255 3.16e-63   NTclustered gi|290983663|ref|XM_002674502.1| 5762 g10065 i0 78.947 37.1266375545852 380 76 83 4 19 396 400 23 Naegleria gruberi uncharacterized protein (NAEGRDRAFT_80585), mRNA blastn 17004 255 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
15897651 15897651 PRJNA615175_P_NODE_133_length_2576_cov_1162.755893_g120_i0 PRJNA615175 133 2576 1162.755893 29952.59180368 Allovahlkampfia sp. 1874883 Heterolobosea other_Eukaryota 3875 0   NTclustered gi|2651357784|gb|PP174299.1| 1874883 g120 i0 94.296 23.4565217391304 2542 128 98 15 17 2550 4557 2025 Allovahlkampfia sp. isolate S28D2 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 60424 3875 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp.
18447183 18447183 PRJNA615175_P_NODE_4935_length_695_cov_18.980707_g4773_i0 PRJNA615175 4935 695 18.980707 131.91591365 Tetramitus jugosus 166959 Heterolobosea other_Eukaryota 195 1.09e-44   NTclustered gi|2233316042|emb|OW569396.1| 166959 g4773 i0 77.457 1.5726618705036 346 64 49 12 259 597 18563 18901 Tetramitus jugosus genome assembly, organelle: mitochondrion blastn 1093 195 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Tetramitus Tetramitus jugosus
18447208 18447208 PRJNA615175_P_NODE_6355_length_604_cov_7.145009_g6190_i0 PRJNA615175 6355 604 7.145009 43.15585436 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 374 1.12e-98   NTclustered gi|290992187|ref|XM_002678670.1| 5762 g6190 i0 80.156 9.54635761589404 514 90 84 9 5 514 65 570 Naegleria gruberi rab family small GTPase (NAEGRDRAFT_82544), mRNA blastn 5766 374 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
19721840 19721840 PRJNA615175_P_NODE_7336_length_557_cov_4.076446_g7171_i0 PRJNA615175 7336 557 4.076446 22.70580422 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 213 2.38e-50   NTclustered gi|11466174|ref|NC_002573.1| 5762 g7171 i0 77.136 13.2064631956912 398 71 70 15 3 391 1916 1530 Naegleria gruberi mitochondrion, complete genome blastn 7356 213 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
21551654 21551654 PRJNA615175_P_NODE_12317_length_408_cov_5.546269_g12149_i0 PRJNA615175 12317 408 5.546269 22.62877752 Naegleria 5761 Heterolobosea other_Eukaryota 219 3.649999999999999e-52   NTclustered gi|2031933096|emb|OD956700.1| 5763 g12149 i0 79.866 25.171568627451 298 60 73 0 41 338 986 1283 Naegleria fowleri Karachi_NF001 strain blastn 10270 219 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri
24821448 24821448 PRJNA615175_P_NODE_8940_length_497_cov_1.811321_g8772_i0 PRJNA615175 8940 497 1.811321 9.00226537 Allovahlkampfia sp. strain SO/1P 500012 Heterolobosea other_Eukaryota 869 0   NTclustered gi|529154115|gb|EU266548.2| 500012 g8772 i0 98.193 65.1750503018109 498 7 100 2 1 497 1964 1468 Allovahlkampfia sp. strain SO/1P small subunit ribosomal RNA gene, complete sequence blastn 32392 869 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp. strain SO/1P

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;