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contig_metadata

17 rows where analysis = "blastn", bioproject = "PRJNA615175" and tax_clade = "Amoebozoa"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 17 ✖

bioproject 1

  • PRJNA615175 · 17 ✖

analysis 1

  • blastn · 17 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
594966 594966 PRJNA615175_P_NODE_24561_length_274_cov_2.865672_g24393_i0 PRJNA615175 24561 274 2.865672 7.85194128 Heterostelium album 2086695 Evosea other_Eukaryota 54.7 0.007   NTclustered gi|1160554294|ref|XM_020572972.1| 670386 g24393 i0 100 0.105839416058394 29 0 11 0 33 61 5714 5686 Polysphondylium pallidum PN500 hypothetical protein (tipC), partial mRNA blastn 29 54.7 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album
595127 595127 PRJNA615175_P_NODE_32681_length_244_cov_3.304094_g32513_i0 PRJNA615175 32681 244 3.304094 8.06198936 Soliformovum expulsum 435423 Evosea other_Eukaryota 350 6.969999999999998e-92   NTclustered gi|260909293|gb|FJ766479.1| 435423 g32513 i0 92.369 97.3606557377049 249 13 100 3 1 244 1501 1748 Soliformovum expulsum culture-collection ATCC:48083 clone pool B 18S ribosomal RNA gene, partial sequence blastn 23756 350 1 Eukaryota Amoebozoa   Evosea Variosea Fractovitellida Soliformoviidae Soliformovum Soliformovum expulsum
2425085 2425085 PRJNA615175_P_NODE_9942_length_466_cov_2.849873_g9774_i0 PRJNA615175 9942 466 2.849873 13.28040818 Paramoeba 200890 Discosea other_Eukaryota 73.1 3.48e-8   NTclustered gi|1079488025|ref|NC_031417.1| 180228 g9774 i0 97.619 0.180257510729614 42 1 9 0 106 147 42784 42743 Paramoeba pemaquidensis culture-collection CCAP:1560/4 mitochondrion, complete genome blastn 84 73.1 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Paramoebidae Paramoeba Paramoeba pemaquidensis
4422735 4422735 PRJNA615175_P_NODE_5684_length_642_cov_3.875220_g5519_i0 PRJNA615175 5684 642 3.87522 24.8789124 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 1050 0   NTclustered gi|470446651|ref|XM_004339935.1| 1257118 g5519 i0 97.403 0.959501557632399 616 16 96 0 1 616 348 963 Acanthamoeba castellanii str. Neff QaSNARE, SYP3/Sed5p/Syntaxin 5-type, putative (ACA1_208440), partial mRNA blastn 616 1050 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
4422762 4422762 PRJNA615175_P_NODE_7804_length_538_cov_3.617204_g7638_i0 PRJNA615175 7804 538 3.617204 19.46055752 Soliformovum irregulare 435424 Evosea other_Eukaryota 795 0   NTclustered gi|146448863|gb|EF513199.1| 435424 g7638 i0 93.309 71.2732342007435 538 36 100 0 1 538 386 923 Soliformovum irregulare elongation factor 1A (EF1A) gene, partial cds blastn 38345 795 1 Eukaryota Amoebozoa   Evosea Variosea Fractovitellida Soliformoviidae Soliformovum Soliformovum irregulare
5698783 5698783 PRJNA615175_P_NODE_6885_length_577_cov_23.109127_g6720_i0 PRJNA615175 6885 577 23.109127 133.33966279 Vannella sp. strain CAZ6/I 325077 Discosea other_Eukaryota 824 0   NTclustered gi|62865939|gb|AY929914.1| 325077 g6720 i0 93.829 95.7625649913345 551 29 95 5 1 549 550 3 Vannella sp. strain CAZ6/I 18S small subunit ribosomal RNA gene, partial sequence blastn 55255 824 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella sp. strain CAZ6/I
10799176 10799176 PRJNA615175_P_NODE_2269_length_1019_cov_2.512685_g2151_i0 PRJNA615175 2269 1019 2.512685 25.604260150000002 Physarum polycephalum 5791 Evosea other_Eukaryota 856 0   NTclustered gi|3209|emb|X14502.1| 5791 g2151 i0 82.68 0.951913640824338 970 162 95 6 1 967 1060 94 Physarum polycephalum plasmodial specific LAV1-2 mRNA blastn 970 856 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Physarum Physarum polycephalum
10799362 10799362 PRJNA615175_P_NODE_3289_length_857_cov_5.854592_g3145_i0 PRJNA615175 3289 857 5.854592 50.17385344 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 1561 0   NTclustered gi|470459156|ref|XM_004341277.1| 1257118 g3145 i0 99.533 73.5670945157526 857 4 100 0 1 857 1147 291 Acanthamoeba castellanii str. Neff ribosomal protein L3, putative (ACA1_264110), partial mRNA blastn 63047 1561 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
12074541 12074541 PRJNA615175_P_NODE_8270_length_520_cov_1.635347_g8102_i0 PRJNA615175 8270 520 1.635347 8.5038044 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 917 0   NTclustered gi|470525847|ref|XM_004356611.1| 1257118 g8102 i0 98.464 1.40576923076923 521 7 100 1 1 520 558 38 Acanthamoeba castellanii str. Neff rho guanine dissociation factor isoform 2, putative (ACA1_174240), partial mRNA blastn 731 917 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
13348972 13348972 PRJNA615175_P_NODE_1671_length_1164_cov_3.054079_g1570_i0 PRJNA615175 1671 1164 3.054079 35.54947956 Heterostelium album 2086695 Evosea other_Eukaryota 743 0   NTclustered gi|1160565652|ref|XM_020580448.1| 670386 g1570 i0 79.25 85.0274914089347 1094 205 93 18 39 1118 1227 142 Polysphondylium pallidum PN500 S-adenosyl-L-homocysteine hydrolase (sahA), partial mRNA blastn 98972 743 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album
17173063 17173063 PRJNA615175_P_NODE_7294_length_559_cov_6.405350_g7129_i0 PRJNA615175 7294 559 6.40535 35.8059065 Ripella platypodia 2047821 Discosea other_Eukaryota 813 0   NTclustered gi|1269228348|gb|MF683473.1| 2047821 g7129 i0 97.292 86.4651162790698 480 11 86 2 1 479 1099 1577 Ripella platypodia clone 21702 18S ribosomal RNA gene, partial sequence blastn 48334 813 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella platypodia
18446756 18446756 PRJNA615175_P_NODE_13555_length_386_cov_3.431310_g13387_i0 PRJNA615175 13555 386 3.43131 13.2448566 Vannella septentrionalis 197531 Discosea other_Eukaryota 676 0   NTclustered gi|300078499|gb|GU001161.1| 197531 g13387 i0 98.196 58.440414507772 388 5 100 1 1 386 3045 2658 Vannella septentrionalis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 22558 676 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella septentrionalis
19721393 19721393 PRJNA615175_P_NODE_15656_length_356_cov_2.583039_g15488_i0 PRJNA615175 15656 356 2.583039 9.19561884 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 481 3.63e-131   NTclustered gi|470486571|ref|XM_004344568.1| 1257118 g15488 i0 90.836 1.04213483146067 371 16 100 5 1 356 136 503 Acanthamoeba castellanii str. Neff uncharacterized protein (ACA1_278060), partial mRNA blastn 371 481 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
19721468 19721468 PRJNA615175_P_NODE_2036_length_1069_cov_18.300201_g1922_i0 PRJNA615175 2036 1069 18.300201 195.62914869 Didymium spongiosum 289992 Evosea other_Eukaryota 870 0   NTclustered gi|2161226356|gb|MZ313554.1| 289992 g1922 i0 81.876 20.2432179607109 1109 129 100 62 1 1069 8173 7097 Mucilago crustacea 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 21640 870 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Didymiaceae Didymium Didymium spongiosum
20997237 20997237 PRJNA615175_P_NODE_25497_length_267_cov_2.381443_g25329_i0 PRJNA615175 25497 267 2.381443 6.35845281 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 359 1.29e-94   NTclustered gi|470400094|ref|XM_004335422.1| 1257118 g25329 i0 99 0.749063670411985 200 2 75 0 1 200 224 423 Acanthamoeba castellanii str. Neff uncharacterized protein (ACA1_245490), partial mRNA blastn 200 359 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
22272206 22272206 PRJNA615175_P_NODE_298_length_2039_cov_2.776195_g274_i0 PRJNA615175 298 2039 2.776195 56.60661605 Didymium iridis 5793 Evosea other_Eukaryota 2538 0   NTclustered gi|2687|emb|X60210.1| 5793 g274 i0 89.453 21.4271701814615 2048 165 99 33 12 2039 843 2859 D.iridis LSU rRNA gene blastn 43690 2538 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Didymiaceae Didymium Didymium iridis
24821025 24821025 PRJNA615175_P_NODE_15660_length_356_cov_2.374558_g15492_i0 PRJNA615175 15660 356 2.374558 8.45342648 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 603 7.419999999999997e-168   NTclustered gi|470525983|ref|XM_004356629.1| 1257118 g15492 i0 99.399 10.561797752809 333 1 94 1 24 356 1 332 Acanthamoeba castellanii str. Neff ribosomal protein S15, putative (ACA1_174430), partial mRNA blastn 3760 603 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;