RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA613025" and tax_phylum = "Nematoda"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA613025 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9520048 9520048 PRJNA613025_S_NODE_20088_length_219_cov_1.500000_g19934_i0 PRJNA613025 20088 219 1.5 3.285 Heterorhabditis bacteriophora 37862 Nematoda Nematoda 311 2.9000000000000004e-80   NTclustered gi|1963716463|emb|LR890121.1| 37862 g19934 i0 94.949 40.1506849315069 198 10 90 0 22 219 1 198 Heterorhabditis bacteriophora partial mRNA for Hb-hsp90-5 isoform (Hb-hsp90-5 isoform gene), clone 22 blastn 8793 311 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Heterorhabditidae Heterorhabditis Heterorhabditis bacteriophora
15177148 15177148 PRJNA613025_S_NODE_25452_length_186_cov_1.481752_g25298_i0 PRJNA613025 25452 186 1.481752 2.75605872 Metazoa 33208 Nematoda Nematoda 337 3.9199999999999994e-88   NTclustered gi|158821895|gb|EU195959.1| 479134 g25298 i0 99.459 100.069892473118 185 1 99 0 2 186 1971 1787 Diploscapter sp. JU359 28S ribosomal RNA gene, partial sequence blastn 18613 337 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Diploscapter Diploscapter sp. JU359

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;