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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA613025" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA613025 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1867534 1867534 PRJNA613025_S_NODE_14482_length_287_cov_5.319328_g14328_i0 PRJNA613025 14482 287 5.319328 15.26647136 Gromochytrium mamkaevae 1486924 Fungi Fungi 78.7 4.38e-10   NTclustered gi|612507318|gb|KF586842.1| 1486924 g14328 i0 97.778 4.78397212543554 45 1 16 0 5 49 6175 6131 Gromochytrium mamkaevae strain CALU x-51 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 1373 78.7 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Gromochytriales Gromochytriaceae Gromochytrium Gromochytrium mamkaevae
1868144 1868144 PRJNA613025_S_NODE_7802_length_485_cov_25.314220_g7650_i0 PRJNA613025 7802 485 25.31422 122.773967 Rhizophydium sp. 2012224 Fungi Fungi 392 2.4499999999999998e-104   NTclustered gi|1866582435|gb|MT730610.1| 2012224 g7650 i0 82.52 100.878350515464 492 43 100 24 1 485 4424 3969 Rhizophydium sp. isolate ARG035 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 48926 392 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales Rhizophydiaceae Rhizophydium Rhizophydium sp.
3142668 3142668 PRJNA613025_S_NODE_2423_length_1184_cov_3.409692_g2338_i0 PRJNA613025 2423 1184 3.409692 40.37075328 Piromyces sp. 45796 Fungi Fungi 1075 0   NTclustered gi|1388116266|gb|MH043820.1| 45796 g2338 i0 100 75.897804054054 582 0 49 0 603 1184 582 1 Piromyces sp. strain B5 Glycosyl hydrolase family 43 mRNA, partial cds blastn 89863 1075 1 Eukaryota Opisthokonta Fungi Chytridiomycota Neocallimastigomycetes Neocallimastigales Neocallimastigaceae Piromyces Piromyces sp.
19000265 19000265 PRJNA613025_S_NODE_28035_length_174_cov_9.192000_g27881_i0 PRJNA613025 28035 174 9.192 15.99408 Chytriomycetaceae 1352827 Fungi Fungi 163 6.480000000000001e-36   NTclustered gi|1866582659|gb|MT730834.1| 2012244 g27881 i0 83.908 101.264367816092 174 24 100 4 1 174 4174 4005 Rhizoclosmatium sp. isolate JEL0824 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 17620 163 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Chytridiales Chytriomycetaceae Rhizoclosmatium Rhizoclosmatium sp.
22269110 22269110 PRJNA613025_S_NODE_30338_length_167_cov_0.864407_g30184_i0 PRJNA613025 30338 167 0.864407 1.44355969 Spizellomyces punctatus 109760 Fungi Fungi 60.2 8.37e-5   NTclustered gi|1026978967|ref|XM_016752275.1| 645134 g30184 i0 97.143 0.209580838323353 35 1 21 0 20 54 202 236 Spizellomyces punctatus DAOM BR117 60S ribosomal protein L37-A (SPPG_04030), partial mRNA blastn 35 60.2 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Spizellomycetaceae Spizellomyces Spizellomyces punctatus
24818052 24818052 PRJNA613025_S_NODE_23100_length_199_cov_1.020000_g22946_i0 PRJNA613025 23100 199 1.02 2.0298 Polychytrium aggregatum 110093 Fungi Fungi 148 2.1399999999999997e-31   NTclustered gi|2432131389|ref|XM_053109302.1| 110093 g22946 i0 80.402 7.87437185929648 199 35 99 3 3 199 674 478 Polychytrium aggregatum ribosomal protein S3Ae (BJ171DRAFT_487525), mRNA blastn 1567 148 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;