RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA613025" and tax_phylum = "Campylobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA613025 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13902779 13902779 PRJNA613025_S_NODE_29371_length_169_cov_1.700000_g29217_i0 PRJNA613025 29371 169 1.7 2.873 Campylobacterales 213849 Bacteria Bacteria 100 4.97e-17   NTclustered gi|34483186|emb|BX571660.1| 844 g29217 i0 88.889 41.508875739645 81 9 48 0 68 148 335613 335533 Wolinella succinogenes, complete genome; segment 4/7 blastn 7015 100 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Wolinella Wolinella succinogenes
18443622 18443622 PRJNA613025_S_NODE_14455_length_288_cov_1.828452_g14301_i0 PRJNA613025 14455 288 1.828452 5.26594176 Campylobacter sp. 19-13652 2840180 Bacteria Bacteria 65.8 3.42e-6   NTclustered gi|2052158881|dbj|AP024713.1| 2840180 g14301 i0 82.667 0.78125 75 11 25 2 71 143 1151782 1151708 Campylobacter sp. 19-13652 DNA, complete genome blastn 225 65.8 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter sp. 19-13652

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;