RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA613025" and tax_phylum = "Bdellovibrionota"

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tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA613025 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
591931 591931 PRJNA613025_S_NODE_29061_length_170_cov_2.322314_g28907_i0 PRJNA613025 29061 170 2.322314 3.9479338 Bdellovibrio bacteriovorus 959 Bacteria Bacteria 111 2.31e-20   NTclustered gi|578016248|gb|CP002190.1| 765869 g28907 i0 79.394 5.45882352941176 165 29 95 5 1 162 609798 609636 Bdellovibrio bacteriovorus W, complete genome blastn 928 111 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio bacteriovorus
6970244 6970244 PRJNA613025_S_NODE_26306_length_182_cov_1.150376_g26152_i0 PRJNA613025 26306 182 1.150376 2.09368432 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 224 3.1e-54   NTclustered gi|2621706492|emb|OY764265.1| 3034175 g26152 i0 88.95 169.203296703297 181 20 99 0 1 181 1697596 1697416 MAG: Bdellovibrionota bacterium isolate efddfb02-ff0c-4ac5-ae96-c61d995422a3 genome assembly, chromosome: 1 blastn 30795 224 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium
17726672 17726672 PRJNA613025_S_NODE_22714_length_201_cov_1.342105_g22560_i0 PRJNA613025 22714 201 1.342105 2.69763105 Pseudobdellovibrionaceae 213483 Bacteria Bacteria 363 7.109999999999999e-96   NTclustered gi|507148233|ref|NR_103040.1| 453816 g22560 i0 99.497 169.388059701493 199 1 99 0 3 201 752 950 Bdellovibrio exovorus strain JSS 23S ribosomal RNA gene, complete sequence blastn 34047 363 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Pseudobdellovibrio Pseudobdellovibrio exovorus
20275200 20275200 PRJNA613025_S_NODE_17476_length_244_cov_5.323077_g17322_i0 PRJNA613025 17476 244 5.323077 12.98830788 Micavibrio 213485 Bacteria Bacteria 291 4.28e-74   NTclustered gi|470487404|ref|NR_076816.1| 349221 g17322 i0 88.211 197.217213114754 246 26 100 2 1 244 2733 2489 Micavibrio aeruginosavorus strain ARL-13 23S ribosomal RNA gene, complete sequence blastn 48121 291 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Micavibrio Micavibrio aeruginosavorus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;