RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA613025" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 5 ✖

tax_kingdom 1

bioproject 1

  • PRJNA613025 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9520267 9520267 PRJNA613025_S_NODE_30268_length_167_cov_0.864407_g30114_i0 PRJNA613025 30268 167 0.864407 1.44355969 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 119 1.36e-22   NTclustered gi|2874254027|emb|OY970352.1| 171953 g30114 i0 88.35 143.814371257485 103 6 60 5 68 167 2368219 2368318 MAG: uncultured Acidobacteriota bacterium isolate MFD01916.bin.c.5 genome assembly, chromosome: 1 blastn 24017 119 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
15177142 15177142 PRJNA613025_S_NODE_24672_length_190_cov_1.510638_g24518_i0 PRJNA613025 24672 190 1.510638 2.8702122 Bacteria 2 Bacteria Bacteria 254 4.17e-63   NTclustered gi|2874253677|emb|OY969111.1| 171953 g24518 i0 91.758 165.426315789474 182 15 96 0 9 190 715901 715720 MAG: uncultured Acidobacteriota bacterium isolate MFD01916.bin.c.3 genome assembly, chromosome: 1 blastn 31431 254 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
18443944 18443944 PRJNA613025_S_NODE_28055_length_174_cov_3.232000_g27901_i0 PRJNA613025 28055 174 3.232 5.62368 Vicinamibacterales bacterium 2910147 Bacteria Bacteria 106 1.11e-18   NTclustered gi|2621701418|emb|OY760136.1| 2910147 g27901 i0 85.294 24.6494252873563 102 15 59 0 1 102 1699451 1699552 MAG: Vicinamibacterales bacterium isolate f9e760c9-8bbe-4e76-9a0a-40d6f1fb97b8 genome assembly, chromosome: 1 blastn 4289 106 1 Bacteria   Pseudomonadati Acidobacteriota Vicinamibacteria Vicinamibacterales     Vicinamibacterales bacterium
19718510 19718510 PRJNA613025_S_NODE_31636_length_164_cov_3.104348_g31482_i0 PRJNA613025 31636 164 3.104348 5.09113072 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 158 2.82e-34   NTclustered gi|2874253692|emb|OY969418.1| 171953 g31482 i0 85.093 31.640243902439 161 17 96 4 2 159 4232873 4233029 MAG: uncultured Acidobacteriota bacterium isolate MFD09212.bin.c.1 genome assembly, chromosome: 1 blastn 5189 158 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
24817754 24817754 PRJNA613025_S_NODE_11080_length_362_cov_1.763578_g10926_i0 PRJNA613025 11080 362 1.763578 6.38415236 Acidobacteriota bacterium 1978231 Bacteria Bacteria 636 7.449999999999999e-178   NTclustered gi|1958098837|gb|CP065005.1| 1978231 g10926 i0 98.343 107.759668508287 362 6 100 0 1 362 4651360 4651721 Acidobacteria bacterium isolate Kalu_18-Q3-R12-55_MAXAC.198_cln chromosome, complete genome blastn 39009 636 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;