RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA613025" and tax_clade = "Apusozoa"

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tax_superkingdom 1

tax_clade 1

  • Apusozoa · 5 ✖

bioproject 1

  • PRJNA613025 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4419757 4419757 PRJNA613025_S_NODE_8504_length_453_cov_4.663366_g8352_i0 PRJNA613025 8504 453 4.663366 21.12504798 Karpovia croatica 2925417 Root_unresolved Root_unresolved 100 1.55e-16   NTclustered gi|2206682173|gb|OM966646.1| 2925417 g8352 i0 88.235 13.5673289183223 85 9 19 1 27 111 6103 6020 Karpovia croatica strain CRO19P6 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 6146 100 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Karpovia Karpovia croatica
6970156 6970156 PRJNA613025_S_NODE_22586_length_202_cov_1.320261_g22432_i0 PRJNA613025 22586 202 1.320261 2.66692722 Thecamonas trahens 529818 Root_unresolved Root_unresolved 135 1.7000000000000002e-27   NTclustered gi|761380055|ref|NC_026452.1| 529818 g22432 i0 82.209 76.0891089108911 163 24 80 5 3 163 28440 28599 Thecamonas trahens strain ATCC 50062 mitochondrion, complete genome blastn 15370 135 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
13345947 13345947 PRJNA613025_S_NODE_25531_length_186_cov_1.043796_g25377_i0 PRJNA613025 25531 186 1.043796 1.94146056 Amastigomonas marina 234594 Root_unresolved Root_unresolved 137 4.27e-28   NTclustered gi|31982973|gb|AY236711.1| 234594 g25377 i0 80.791 10.3279569892473 177 32 95 2 1 176 1373 1548 Amastigomonas marina heat shock protein 90 (Hsp90) gene, partial cds blastn 1921 137 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Amastigomonas Amastigomonas marina
19718536 19718536 PRJNA613025_S_NODE_3296_length_940_cov_2.824916_g3180_i0 PRJNA613025 3296 940 2.824916 26.5542104 Podomonas capensis 2925399 Root_unresolved Root_unresolved 174 1.94e-38   NTclustered gi|2206682168|gb|OM966641.1| 2925399 g3180 i0 82.039 22.4329787234043 206 35 22 2 232 437 3908 3705 Podomonas capensis strain SPRINTER small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 21087 174 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Podomonas Podomonas capensis
19718551 19718551 PRJNA613025_S_NODE_33456_length_161_cov_4.366071_g33302_i0 PRJNA613025 33456 161 4.366071 7.02937431 Mylnikovia oxoniensis 1314681 Root_unresolved Root_unresolved 163 5.92e-36   NTclustered gi|2206682162|gb|OM966635.1| 1314681 g33302 i0 85.89 88.1242236024845 163 11 100 9 1 161 3534 3686 Mylnikovia oxoniensis strain CCAP19012 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 14188 163 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Mylnikovia Mylnikovia oxoniensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;