RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA611476" and tax_phylum = "Porifera"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Porifera · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA611476 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13344053 13344053 PRJNA611476_P_NODE_77271_length_252_cov_1.720670_g76480_i0 PRJNA611476 77271 252 1.72067 4.3360884 Dysidea avara 196820 Porifera other_Eukaryota 52.8 0.023   NTclustered gi|2749511173|ref|XM_066064104.1| 196820 g76480 i0 100 1.55555555555556 28 0 11 0 195 222 480 507 PREDICTED: Dysidea avara protein NLRC3-like (LOC136268688), transcript variant X11, mRNA blastn 392 52.8 1 Eukaryota Opisthokonta Metazoa Porifera Demospongiae Dictyoceratida Dysideidae Dysidea Dysidea avara
19716194 19716194 PRJNA611476_P_NODE_54256_length_297_cov_1.031250_g53465_i0 PRJNA611476 54256 297 1.03125 3.0628125 Aplysina fulva 289401 Porifera other_Eukaryota 215 3.33e-51   NTclustered gi|258690453|gb|GQ330987.1| 289401 g53465 i0 81.481 81.4242424242424 270 42 90 7 31 296 503 238 Aplysina fulva ATP synthase beta subunit (ATPB) mRNA, partial cds blastn 24183 215 1 Eukaryota Opisthokonta Metazoa Porifera Demospongiae Verongiida Aplysinidae Aplysina Aplysina fulva
22266956 22266956 PRJNA611476_P_NODE_66298_length_273_cov_2.165000_g65507_i0 PRJNA611476 66298 273 2.165 5.91045 Sycon ciliatum 27933 Porifera other_Eukaryota 54.7 0.007   NTclustered gi|2732930614|ref|XM_065332370.1| 27933 g65507 i0 100 1.74725274725275 29 0 11 0 220 248 2149 2177 PREDICTED: Sycon ciliatum transcription factor E4F1-like (LOC135819207), mRNA blastn 477 54.7 1 Eukaryota Opisthokonta Metazoa Porifera Calcarea Leucosolenida Sycettidae Sycon Sycon ciliatum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;