RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA611476" and tax_phylum = "Platyhelminthes"

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tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA611476 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1865300 1865300 PRJNA611476_P_NODE_34922_length_354_cov_5.669039_g34131_i0 PRJNA611476 34922 354 5.669039 20.06839806 Clonorchis sinensis 79923 Platyhelminthes Platyhelminthes 106 2.53e-18   NTclustered gi|325459339|gb|HM020387.1| 79923 g34131 i0 77.596 8.86723163841808 183 35 52 5 126 308 200 376 Clonorchis sinensis secretory eggshell protein precursor (SEP18.7) mRNA, complete cds blastn 3139 106 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Opisthorchiida Opisthorchiidae Clonorchis Clonorchis sinensis
3140662 3140662 PRJNA611476_P_NODE_62183_length_281_cov_1.341346_g61392_i0 PRJNA611476 62183 281 1.341346 3.76918226 Schmidtea mediterranea 79327 Platyhelminthes Platyhelminthes 274 5.08e-69   NTclustered gi|62199102|gb|AY967472.1| 79327 g61392 i0 84.397 103.946619217082 282 38 99 5 3 281 429 151 Schmidtea mediterranea clone HE.1.01H mRNA sequence blastn 29209 274 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Rhabditophora Tricladida Dugesiidae Schmidtea Schmidtea mediterranea
5692945 5692945 PRJNA611476_P_NODE_30425_length_373_cov_2.403333_g29634_i0 PRJNA611476 30425 373 2.403333 8.96443209 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 219 3.3099999999999993e-52   NTclustered gi|68479954|gb|DQ076149.1| 6182 g29634 i0 79.279 0.892761394101877 333 53 87 15 46 370 68 392 Schistosoma japonicum clone 1XA1 unknown mRNA blastn 333 219 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
6967630 6967630 PRJNA611476_P_NODE_27766_length_387_cov_3.898089_g26975_i0 PRJNA611476 27766 387 3.898089 15.08560443 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 671 0   NTclustered gi|68479954|gb|DQ076149.1| 6182 g26975 i0 97.933 1 387 8 100 0 1 387 29 415 Schistosoma japonicum clone 1XA1 unknown mRNA blastn 387 671 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
7526004 7526004 PRJNA611476_P_NODE_75906_length_255_cov_1.269231_g75115_i0 PRJNA611476 75906 255 1.269231 3.23653905 Opisthokonta 33154 Platyhelminthes Platyhelminthes 54.7 0.006   NTclustered gi|690545570|emb|LN098773.1| 99802 g75115 i0 100 0.227450980392157 29 0 11 0 8 36 779 807 Spirometra erinaceieuropaei genome assembly S_erinaceieuropaei ,scaffold SPER_scaffold0093663 blastn 58 54.7 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Cestoda Diphyllobothriidea Diphyllobothriidae Spirometra Spirometra erinaceieuropaei
23541623 23541623 PRJNA611476_P_NODE_20579_length_439_cov_6.101093_g19788_i0 PRJNA611476 20579 439 6.101093 26.78379827 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 505 2.709999999999999e-138   NTclustered gi|68479954|gb|DQ076149.1| 6182 g19788 i0 88.835 0.938496583143508 412 45 94 1 1 411 17 428 Schistosoma japonicum clone 1XA1 unknown mRNA blastn 412 505 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;