RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA611476" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA611476 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12626625 12626625 PRJNA611476_P_NODE_118570_length_238_cov_2.684848_g117779_i0 PRJNA611476 118570 238 2.684848 6.38993824 Pristionchus 54125 Nematoda Nematoda 139 1.6e-28   NTclustered gi|150982129|gb|EF634653.1| 358043 g117779 i0 81.657 8.53361344537815 169 29 71 2 20 187 177 10 Pristionchus sp. 6 RS5101 large subunit ribosomal protein 27a (rpl-27a) mRNA, partial cds blastn 2031 139 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus sp. 6 RS5101
14618905 14618905 PRJNA611476_P_NODE_77272_length_252_cov_1.720670_g76481_i0 PRJNA611476 77272 252 1.72067 4.3360884 Caenorhabditis briggsae 6238 Nematoda Nematoda 102 2.24e-17   NTclustered gi|268579136|ref|XM_002644505.1| 6238 g76481 i0 80.137 21.8174603174603 146 21 56 7 55 196 58 199 Caenorhabditis briggsae Protein CBR-PDI-2 (Cbr-pdi-2), partial mRNA blastn 5498 102 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
14619052 14619052 PRJNA611476_P_NODE_8812_length_654_cov_4.249570_g8037_i0 PRJNA611476 8812 654 4.24957 27.7921878 Koerneria sp. RS1982 358044 Nematoda Nematoda 233 2.17e-56   NTclustered gi|150982263|gb|EF634720.1| 358044 g8037 i0 82.353 28.4327217125382 272 44 41 4 59 328 30 299 Koerneria sp. RS1982 large subunit ribosomal protein 30 (rpl-30) mRNA, partial cds blastn 18595 233 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Koerneria Koerneria sp. RS1982

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;