RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA611476" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 5 ✖

tax_kingdom 1

bioproject 1

  • PRJNA611476 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10794468 10794468 PRJNA611476_P_NODE_97169_length_246_cov_0.890173_g96378_i0 PRJNA611476 97169 246 0.890173 2.18982558 Spiroplasma endosymbiont of Drosophila atripex 614643 Bacteria Bacteria 182 2.72e-41   NTclustered gi|2444111447|gb|CP117528.1| 614643 g96378 i0 94.118 10.369918699187 119 7 48 0 1 119 900480 900362 MAG: Spiroplasma endosymbiont of Drosophila atripex isolate sAtri chromosome, complete genome blastn 2551 182 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Entomoplasmatales Spiroplasmataceae Spiroplasma Spiroplasma endosymbiont of Drosophila atripex
17167276 17167276 PRJNA611476_P_NODE_38734_length_341_cov_1.160448_g37943_i0 PRJNA611476 38734 341 1.160448 3.95712768 [Mycoplasma] gypis 92404 Bacteria Bacteria 52.8 0.032   NTclustered gi|2702675406|gb|CP148066.1| 92404 g37943 i0 100 0.0821114369501466 28 0 8 0 66 93 194695 194722 [Mycoplasma] gypis strain B1/T1 chromosome, complete genome blastn 28 52.8 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Metamycoplasma [Mycoplasma] gypis
18440837 18440837 PRJNA611476_P_NODE_101275_length_245_cov_0.895349_g100484_i0 PRJNA611476 101275 245 0.895349 2.19360505 Mesomycoplasma ovipneumoniae 29562 Bacteria Bacteria 52.8 0.022   NTclustered gi|2290351421|gb|CP079199.1| 29562 g100484 i0 100 0.114285714285714 28 0 11 0 116 143 646763 646736 Mesomycoplasma ovipneumoniae strain 274 chromosome, complete genome blastn 28 52.8 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mesomycoplasma Mesomycoplasma ovipneumoniae
19716737 19716737 PRJNA611476_P_NODE_96076_length_247_cov_0.885057_g95285_i0 PRJNA611476 96076 247 0.885057 2.18609079 uncultured Mycoplasmataceae bacterium 300027 Bacteria Bacteria 451 1.88e-122   NTclustered gi|1824112148|gb|MN991199.1| 300027 g95285 i0 99.595 2.31578947368421 247 1 100 0 1 247 81944 81698 Uncultured Mycoplasmataceae bacterium isolate LL85 clone UCI_10-1 blastn 572 451 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae   uncultured Mycoplasmataceae bacterium
25374587 25374587 PRJNA611476_P_NODE_79560_length_251_cov_0.865169_g78769_i0 PRJNA611476 79560 251 0.865169 2.17157419 Mesomycoplasma 2923352 Bacteria Bacteria 464 2.47e-126   NTclustered gi|1720621726|gb|CP035041.1| 2100 g78769 i0 100 16.9880478087649 251 0 100 0 1 251 958 1208 Mesomycoplasma hyorhinis strain JF5820 chromosome, complete genome blastn 4264 464 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mesomycoplasma Mesomycoplasma hyorhinis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;