RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA611476" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 4 ✖

bioproject 1

  • PRJNA611476 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2423288 2423288 PRJNA611476_P_NODE_53822_length_298_cov_1.208889_g53031_i0 PRJNA611476 53822 298 1.208889 3.60248922 Ilyobacter 167639 Bacteria Bacteria 359 1.46e-94   NTclustered gi|2814788377|emb|OY764057.2| 544433 g53031 i0 88.514 1.98657718120805 296 34 99 0 1 296 143019 143314 MAG: uncultured Ilyobacter sp. isolate b6197fd5-c757-4c76-928f-f28f0df2880b genome assembly, chromosome: 1 blastn 592 359 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Ilyobacter uncultured Ilyobacter sp.
5693405 5693405 PRJNA611476_P_NODE_64925_length_276_cov_1.320197_g64134_i0 PRJNA611476 64925 276 1.320197 3.64374372 Fusobacterium polymorphum 76857 Bacteria Bacteria 510 3.48e-140   NTclustered gi|2706433495|gb|CP077153.1| 76857 g64134 i0 100 92.7101449275362 276 0 100 0 1 276 31853 31578 Fusobacterium polymorphum strain KCOM1274 chromosome, complete genome blastn 25588 510 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium polymorphum
10076057 10076057 PRJNA611476_P_NODE_108948_length_243_cov_0.905882_g108157_i0 PRJNA611476 108948 243 0.905882 2.20129326 Fusobacterium 848 Bacteria Bacteria 449 6.65e-122   NTclustered gi|2446175567|gb|CP117964.1| 851 g108157 i0 100 493.012345679012 243 0 100 0 1 243 995987 996229 Fusobacterium nucleatum strain 2/1/50A chromosome, complete genome blastn 119802 449 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium nucleatum
22825005 22825005 PRJNA611476_P_NODE_16058_length_492_cov_2.446301_g15268_i0 PRJNA611476 16058 492 2.446301 12.03580092 Streptobacillus 34104 Bacteria Bacteria 91.6 1.02e-13   NTclustered gi|1356701568|gb|CP027400.1| 34105 g15268 i0 79.688 15.8577235772358 128 24 26 2 102 228 1442897 1443023 Streptobacillus moniliformis strain FDAARGOS_310 chromosome, complete genome blastn 7802 91.6 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Streptobacillus Streptobacillus moniliformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;