RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA610520" and tax_phylum = "Bacteroidota"

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tax_superkingdom 1

tax_phylum 1

  • Bacteroidota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA610520 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1864513 1864513 PRJNA610520_S_NODE_71142_length_231_cov_2.063291_g71052_i0 PRJNA610520 71142 231 2.063291 4.76620221 Flavobacterium sp. Sr18 935222 Bacteria Bacteria 427 2.9399999999999998e-115   NTclustered gi|1818223938|gb|CP049329.1| 935222 g71052 i0 100 100.220779220779 231 0 100 0 1 231 2672238 2672468 Flavobacterium sp. Sr18 chromosome, complete genome blastn 23151 427 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium sp. Sr18
6966884 6966884 PRJNA610520_S_NODE_71826_length_226_cov_3.143791_g71736_i0 PRJNA610520 71826 226 3.143791 7.10496766 Flavobacterium sp. Sr18 935222 Bacteria Bacteria 407 3.73e-109   NTclustered gi|1818223938|gb|CP049329.1| 935222 g71736 i0 99.115 1 226 2 100 0 1 226 1679428 1679203 Flavobacterium sp. Sr18 chromosome, complete genome blastn 226 407 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium sp. Sr18
8241427 8241427 PRJNA610520_S_NODE_29147_length_326_cov_1.545455_g29057_i0 PRJNA610520 29147 326 1.545455 5.0381833 Flavobacterium sp. Sr18 935222 Bacteria Bacteria 575 1.4699999999999996e-159   NTclustered gi|1818223938|gb|CP049329.1| 935222 g29057 i0 98.466 99.6840490797546 326 5 100 0 1 326 2665418 2665093 Flavobacterium sp. Sr18 chromosome, complete genome blastn 32497 575 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium sp. Sr18

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;