RNAquarium Metadata Server
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contig_metadata

1 row where analysis = "blastn", bioproject = "PRJNA610520" and tax_clade = "Sar"

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tax_superkingdom 1

tax_clade 1

bioproject 1

  • PRJNA610520 · 1 ✖

analysis 1

  • blastn · 1 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6966665 6966665 PRJNA610520_S_NODE_17946_length_369_cov_1.800676_g17856_i0 PRJNA610520 17946 369 1.800676 6.64449444 Spumella sinechrysos 2849684 SAR_Eukaryotes SAR_Eukaryotes 370 8.52e-98   NTclustered gi|2055919754|gb|MZ420312.1| 2849684 g17856 i0 96.035 61.3035230352304 227 9 62 0 1 227 1526 1752 Spumella sinechrysos strain Hwarim032418A7 large subunit ribosomal RNA gene, partial sequence blastn 22621 370 1 Eukaryota Sar     Chrysophyceae Chromulinales Chromulinaceae Spumella Spumella sinechrysos

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;