RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA609258" and tax_clade = "Discoba"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Discoba · 2 ✖

bioproject 1

  • PRJNA609258 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9516161 9516161 PRJNA609258_P_NODE_52328_length_250_cov_0.881356_g51943_i0 PRJNA609258 52328 250 0.881356 2.20339 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 279 9.54e-71   NTclustered gi|256665309|gb|AC237580.1| 5762 g51943 i0 90.278 1.716 216 18 85 1 38 250 16560 16775 Naegleria gruberi clone JGIBGAG-5N11, complete sequence blastn 429 279 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
17165281 17165281 PRJNA609258_P_NODE_42594_length_279_cov_1.791262_g42209_i0 PRJNA609258 42594 279 1.791262 4.99762098 Trypanosoma theileri 67003 Euglenozoa other_Eukaryota 361 3.76e-95   NTclustered gi|2026667531|dbj|LC618031.1| 67003 g42209 i0 92.218 131 257 16 91 3 27 279 4734 4478 Trypanosoma theileri OSK-16 genes for 18S rRNA, ITS1, 5.8S rRNA, ITS2, 28S rRNA, ITS3, ITS4, partial and complete sequence blastn 36549 361 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma theileri

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;