RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA609258" and tax_clade = "Amoebozoa"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 3 ✖

bioproject 1

  • PRJNA609258 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
587833 587833 PRJNA609258_P_NODE_53721_length_249_cov_0.886364_g53336_i0 PRJNA609258 53721 249 0.886364 2.20704636 Dictyostelium purpureum 5786 Evosea other_Eukaryota 76.8 1.34e-9   NTclustered gi|330802308|ref|XM_003289113.1| 5786 g53336 i0 91.071 0.634538152610442 56 5 22 0 156 211 1 56 Dictyostelium purpureum uncharacterized protein (DICPUDRAFT_48405), partial mRNA blastn 158 76.8 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
8239912 8239912 PRJNA609258_P_NODE_25447_length_373_cov_6.436667_g25063_i0 PRJNA609258 25447 373 6.436667 24.00876791 uncultured Rhizamoeba 1260765 Tubulinea other_Eukaryota 84.2 1.26e-11   NTclustered gi|511487963|gb|JX898537.1| 1260765 g25063 i0 91.667 0.276139410187668 60 5 16 0 42 101 309 250 Uncultured Rhizamoeba clone HCA_D03-34 28S ribosomal RNA gene, partial sequence blastn 103 84.2 1 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida Flabellulidae   uncultured Rhizamoeba
19714254 19714254 PRJNA609258_P_NODE_49896_length_253_cov_0.866667_g49511_i0 PRJNA609258 49896 253 0.866667 2.19266751 Cavostelium apophysatum 435410 Evosea other_Eukaryota 261 3.5e-65   NTclustered gi|146448837|gb|EF513185.1| 435410 g49511 i0 85.375 96.3359683794466 253 35 99 2 2 253 594 343 Cavostelium apophysatum elongation factor 1A (EF1A) gene, partial cds blastn 24373 261 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Cavostelium Cavostelium apophysatum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;