RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA608894" and tax_superkingdom = "Archaea"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

  • Archaea · 2 ✖

tax_phylum 1

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA608894 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
17163099 17163099 PRJNA608894_P_NODE_31794_length_322_cov_5.333333_g31295_i0 PRJNA608894 31794 322 5.333333 17.17333226 uncultured archaeon 115547 Archaea Archaea 342 1.6e-89   NTclustered gi|1032564008|gb|KX029804.1| 115547 g31295 i0 95.392 66.5993788819876 217 7 67 2 106 322 250 37 Uncultured archaeon clone A_OTU_328 16S ribosomal RNA gene, partial sequence blastn 21445 342 1 Archaea               uncultured archaeon
22262105 22262105 PRJNA608894_P_NODE_13118_length_637_cov_21.198582_g8127_i1 PRJNA608894 13118 637 21.198582 135.03496734 uncultured Methanoregula sp. 1005933 Archaea Archaea 736 0   NTclustered gi|2621785414|emb|OY781872.1| 1005933 g8127 i1 90.767 195.243328100471 574 20 88 17 75 637 3117846 3117295 MAG: uncultured Methanoregula sp. isolate a338d9b7-13de-4e9d-8f1a-cfe667c23436 genome assembly, chromosome: 1 blastn 124370 736 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanoregulaceae Methanoregula uncultured Methanoregula sp.

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;