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contig_metadata

15 rows where analysis = "blastn", bioproject = "PRJNA608894" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 15 ✖

tax_clade 1

bioproject 1

  • PRJNA608894 · 15 ✖

analysis 1

  • blastn · 15 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1147210 1147210 PRJNA608894_P_NODE_49741_length_251_cov_1.685393_g49242_i0 PRJNA608894 49741 251 1.685393 4.23033643 Peronosporaceae 4777 SAR_Eukaryotes SAR_Eukaryotes 252 2.09e-62   NTclustered gi|2248513440|ref|NC_063805.1| 4781 g49242 i0 84.98 105.135458167331 253 33 100 4 1 251 2440 2191 Plasmopara halstedii isolate 710 mitochondrion, complete genome blastn 26389 252 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Plasmopara Plasmopara halstedii
3136776 3136776 PRJNA608894_P_NODE_61023_length_236_cov_2.484663_g60524_i0 PRJNA608894 61023 236 2.484663 5.86380468 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.006   NTclustered gi|2795057081|ref|XM_067944356.1| 4785 g60524 i0 100 0.122881355932203 29 0 12 0 100 128 44 16 Phytophthora cinnamomi uncharacterized protein (IUM83_19310), partial mRNA blastn 29 54.7 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
4412717 4412717 PRJNA608894_P_NODE_20344_length_450_cov_3.692308_g19848_i0 PRJNA608894 20344 450 3.692308 16.615386 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 268 3.98e-67   NTclustered gi|698822976|ref|XM_009846215.1| 112090 g19848 i0 83.505 62.2155555555556 291 45 64 3 88 377 527 239 Aphanomyces astaci 40S ribosomal protein S13 mRNA blastn 27997 268 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
4975280 4975280 PRJNA608894_P_NODE_56364_length_245_cov_0.889535_g55865_i0 PRJNA608894 56364 245 0.889535 2.17936075 root 1 Root_unresolved Root_unresolved 222 1.59e-53   NTclustered gi|166044497|emb|CU367406.1| 100861 g55865 i0 83.402 87.4612244897959 241 39 98 1 6 245 5 245 Aphanomyces euteiches cDNA blastn 21428 222 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
6963870 6963870 PRJNA608894_P_NODE_43426_length_271_cov_1.459596_g42927_i0 PRJNA608894 43426 271 1.459596 3.95550516 Phytophthora nicotianae 4792 SAR_Eukaryotes SAR_Eukaryotes 339 1.7e-88   NTclustered gi|675211346|ref|XM_008916310.1| 761204 g42927 i0 89.259 11.5867158671587 270 29 99 0 2 271 380 111 Phytophthora parasitica INRA-310 60S ribosomal protein L44 mRNA blastn 3140 339 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora nicotianae
8238748 8238748 PRJNA608894_P_NODE_48227_length_255_cov_2.307692_g47728_i0 PRJNA608894 48227 255 2.307692 5.8846146 Phytophthora sojae 67593 SAR_Eukaryotes SAR_Eukaryotes 193 1.31e-44   NTclustered gi|695403226|ref|XM_009524933.1| 67593 g47728 i0 83.495 8.65882352941176 206 34 81 0 15 220 260 55 Phytophthora sojae hypothetical protein mRNA blastn 2208 193 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae
9513906 9513906 PRJNA608894_P_NODE_39368_length_285_cov_4.533019_g38869_i0 PRJNA608894 39368 285 4.533019 12.91910415 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 455 1.72e-123   NTclustered gi|325195057|emb|FR825852.1| 890382 g38869 i0 95.455 99.3438596491228 286 12 100 1 1 285 156 441 Albugo laibachii Nc14, genomic contig CONTIG_2891_NC14_v4_540_391 blastn 28313 455 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
10075565 10075565 PRJNA608894_P_NODE_27688_length_355_cov_1.613475_g27189_i0 PRJNA608894 27688 355 1.613475 5.72783625 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 145 5.3899999999999995e-30   NTclustered gi|301119740|ref|XM_002907552.1| 403677 g27189 i0 81.818 40.3323943661972 176 28 49 4 1 173 412 238 Phytophthora infestans T30-4 60S ribosomal protein L23a (PITG_02694), mRNA blastn 14318 145 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora infestans
10789415 10789415 PRJNA608894_P_NODE_23869_length_397_cov_0.833333_g23372_i0 PRJNA608894 23869 397 0.833333 3.30833201 Saprolegnia parasitica 101203 SAR_Eukaryotes SAR_Eukaryotes 198 4.61e-46   NTclustered gi|813125660|ref|XM_012341391.1| 695850 g23372 i0 80.074 27.5944584382872 271 50 68 4 96 364 299 31 Saprolegnia parasitica CBS 223.65 elongation factor 2 mRNA blastn 10955 198 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
12064876 12064876 PRJNA608894_P_NODE_39170_length_286_cov_1.685446_g38671_i0 PRJNA608894 39170 286 1.685446 4.82037556 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 279 1.11e-70   NTclustered gi|166052378|emb|CU365886.1| 100861 g38671 i0 84.615 68.6538461538462 286 38 100 5 1 286 345 66 Aphanomyces euteiches cDNA blastn 19635 279 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
13339714 13339714 PRJNA608894_P_NODE_46411_length_261_cov_1.547872_g45912_i0 PRJNA608894 46411 261 1.547872 4.03994592 Apodachlya brachynema 92981 SAR_Eukaryotes SAR_Eukaryotes 213 1.03e-50   NTclustered gi|59894139|gb|AY729852.1| 92981 g45912 i0 81.853 44.8812260536398 259 42 98 4 7 261 494 237 Apodachlya brachynema heat shock protein 90 gene, partial cds blastn 11714 213 1 Eukaryota Sar   Oomycota Saprolegniomycetes Leptomitales Leptomitaceae Apodachlya Apodachlya brachynema
15888504 15888504 PRJNA608894_P_NODE_43393_length_271_cov_1.550505_g42894_i0 PRJNA608894 43393 271 1.550505 4.20186855 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 152 2.38e-32   NTclustered gi|2795045505|ref|XM_067944074.1| 4785 g42894 i0 78.138 4.57933579335793 247 48 90 5 3 246 351 108 Phytophthora cinnamomi Ribosomal protein S2 (IUM83_19045), partial mRNA blastn 1241 152 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
17163363 17163363 PRJNA608894_P_NODE_44894_length_266_cov_1.595855_g44395_i0 PRJNA608894 44894 266 1.595855 4.2449743 Phytophthora sojae 67593 SAR_Eukaryotes SAR_Eukaryotes 324 4.67e-84   NTclustered gi|695392270|ref|XM_009521989.1| 67593 g44395 i0 88.931 5.89097744360902 262 29 98 0 1 262 406 145 Phytophthora sojae hypothetical protein mRNA blastn 1567 324 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae
18437162 18437162 PRJNA608894_P_NODE_20075_length_455_cov_3.232984_g19579_i0 PRJNA608894 20075 455 3.232984 14.7100772 Saprolegnia parasitica 101203 SAR_Eukaryotes SAR_Eukaryotes 228 6.829999999999997e-55   NTclustered gi|813141990|ref|XM_012343753.1| 695850 g19579 i0 81.164 11.0307692307692 292 47 63 8 168 455 482 195 Saprolegnia parasitica CBS 223.65 40S ribosomal protein S11 mRNA blastn 5019 228 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
24812063 24812063 PRJNA608894_P_NODE_54180_length_247_cov_0.885057_g53681_i0 PRJNA608894 54180 247 0.885057 2.18609079 Saprolegnia diclina 112098 SAR_Eukaryotes SAR_Eukaryotes 318 1.9899999999999998e-82   NTclustered gi|669152195|ref|XM_008613438.1| 1156394 g53681 i0 89.919 5.87449392712551 248 23 100 2 1 247 721 475 Saprolegnia diclina VS20 40S ribosomal protein S2 mRNA blastn 1451 318 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia diclina

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;