RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA608894" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA608894 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
20987932 20987932 PRJNA608894_P_NODE_44197_length_268_cov_2.246154_g43698_i0 PRJNA608894 44197 268 2.246154 6.01969272 Koerneria sp. RS1982 358044 Nematoda Nematoda 148 3.0399999999999996e-31   NTclustered gi|150984422|gb|EF634853.1| 358044 g43698 i0 80.851 3.01492537313433 188 36 70 0 51 238 9 196 Koerneria sp. RS1982 small subunit ribosomal protein 1 (rps-1) mRNA, partial cds blastn 808 148 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Koerneria Koerneria sp. RS1982
24811871 24811871 PRJNA608894_P_NODE_44600_length_267_cov_1.587629_g44101_i0 PRJNA608894 44600 267 1.587629 4.23896943 Ditylenchus destructor 166010 Nematoda Nematoda 106 1.85e-18   NTclustered gi|321173528|gb|HQ123250.1| 166010 g44101 i0 93.056 8.19475655430712 72 5 27 0 186 257 781 710 Ditylenchus destructor 14-3-3 (14-3-3a) mRNA, complete cds blastn 2188 106 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Anguinidae Ditylenchus Ditylenchus destructor
24812036 24812036 PRJNA608894_P_NODE_52760_length_248_cov_1.320000_g52261_i0 PRJNA608894 52760 248 1.32 3.2736 Caenorhabditis briggsae 6238 Nematoda Nematoda 97.1 1.02e-15   NTclustered gi|268579136|ref|XM_002644505.1| 6238 g52261 i0 82.906 23.0322580645161 117 10 45 7 42 153 56 167 Caenorhabditis briggsae Protein CBR-PDI-2 (Cbr-pdi-2), partial mRNA blastn 5712 97.1 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;