RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA608894" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA608894 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4412989 4412989 PRJNA608894_P_NODE_34864_length_306_cov_1.905579_g34365_i0 PRJNA608894 34864 306 1.905579 5.83107174 Sorangium cellulosum 56 Bacteria Bacteria 52.8 0.029   NTclustered gi|1338588479|gb|CP012673.1| 56 g34365 i0 100 0.0915032679738562 28 0 9 0 279 306 5780255 5780228 Sorangium cellulosum strain So ce26 chromosome, complete genome blastn 28 52.8 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Sorangium Sorangium cellulosum
5689601 5689601 PRJNA608894_P_NODE_61705_length_229_cov_2.217949_g61206_i0 PRJNA608894 61705 229 2.217949 5.07910321 Haliangium ochraceum 80816 Bacteria Bacteria 128 3.3e-25   NTclustered gi|262076673|gb|CP001804.1| 502025 g61206 i0 82.639 20.2838427947598 144 25 63 0 22 165 9394911 9394768 Haliangium ochraceum DSM 14365, complete genome blastn 4645 128 1 Bacteria   Pseudomonadati Myxococcota   Haliangiales Kofleriaceae Haliangium Haliangium ochraceum
20988023 20988023 PRJNA608894_P_NODE_50017_length_251_cov_0.865169_g49518_i0 PRJNA608894 50017 251 0.865169 2.17157419 Corallococcus coralloides 184914 Bacteria Bacteria 52.8 0.023   NTclustered gi|2851136330|gb|CP172866.1| 184914 g49518 i0 100 0.111553784860558 28 0 11 0 218 245 9558830 9558803 Corallococcus coralloides strain KYC2213 chromosome, complete genome blastn 28 52.8 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Corallococcus Corallococcus coralloides

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;