RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA608894" and tax_phylum = "Evosea"

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tax_superkingdom 1

tax_phylum 1

  • Evosea · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA608894 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4412841 4412841 PRJNA608894_P_NODE_28104_length_351_cov_2.661871_g27605_i0 PRJNA608894 28104 351 2.661871 9.34316721 Arcyria sp. 5 3234316 Evosea other_Eukaryota 220 8.59e-53   NTclustered gi|2772191493|gb|PQ014924.1| 3234316 g27605 i0 79.141 68.8575498575499 326 62 92 6 29 351 842 520 Arcyria sp. 5 voucher sc32693 translation elongation factor 1-alpha (EF1a) gene, partial cds blastn 24169 220 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Trichiida Trichiidae Arcyria Arcyria sp. 5
13339486 13339486 PRJNA608894_P_NODE_34271_length_309_cov_3.042373_g33772_i0 PRJNA608894 34271 309 3.042373 9.40093257 Artodiscus saltans 2598528 Evosea other_Eukaryota 165 3.55e-36   NTclustered gi|1708283174|gb|MH729177.1| 2598528 g33772 i0 86.986 64.9061488673139 146 19 47 0 1 146 464 319 Artodiscus saltans clone 3 18S ribosomal RNA gene, partial sequence blastn 20056 165 1 Eukaryota Amoebozoa   Evosea Variosea     Artodiscus Artodiscus saltans
16449842 16449842 PRJNA608894_P_NODE_56053_length_245_cov_0.895349_g55554_i0 PRJNA608894 56053 245 0.895349 2.19360505 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 126 1.28e-24   NTclustered gi|260909292|gb|FJ766478.1| 435420 g55554 i0 96.104 31.6040816326531 77 3 31 0 1 77 1297 1373 Schizoplasmodiopsis amoeboidea strain BG7A-12B piece G 18S ribosomal RNA gene, partial sequence blastn 7743 126 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida   Schizoplasmodiopsis Schizoplasmodiopsis amoeboidea

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;