RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA608894" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA608894 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4412714 4412714 PRJNA608894_P_NODE_20064_length_456_cov_0.916449_g19568_i0 PRJNA608894 20064 456 0.916449 4.17900744 Fimicolochytrium jonesii 1396493 Fungi Fungi 285 4.01e-72   NTclustered gi|2432060763|ref|XM_053069565.1| 1396493 g19568 i0 79.602 31.2258771929825 402 78 88 4 27 426 646 247 Fimicolochytrium jonesii ribosomal protein L3-domain-containing protein (EV422DRAFT_519007), mRNA blastn 14239 285 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Powellomycetaceae Fimicolochytrium Fimicolochytrium jonesii
5689324 5689324 PRJNA608894_P_NODE_45845_length_263_cov_1.389474_g45346_i0 PRJNA608894 45845 263 1.389474 3.65431662 Polychytrium aggregatum 110093 Fungi Fungi 165 2.96e-36   NTclustered gi|2432155304|ref|XM_053111518.1| 110093 g45346 i0 80.93 3.0532319391635 215 35 81 5 40 251 299 88 Polychytrium aggregatum ribosomal L27e protein family-domain-containing protein (BJ171DRAFT_510919), mRNA blastn 803 165 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
14614073 14614073 PRJNA608894_P_NODE_19652_length_463_cov_6.692308_g19156_i0 PRJNA608894 19652 463 6.692308 30.98538604 Fimicolochytrium jonesii 1396493 Fungi Fungi 128 7.26e-25   NTclustered gi|2432097581|ref|XM_053071233.1| 1396493 g19156 i0 82.313 4.21166306695464 147 26 32 0 32 178 83 229 Fimicolochytrium jonesii 30S ribosomal protein S30e (EV422DRAFT_541825), mRNA blastn 1950 128 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Powellomycetaceae Fimicolochytrium Fimicolochytrium jonesii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;