RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA608894" and tax_phylum = "Bdellovibrionota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA608894 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1861366 1861366 PRJNA608894_P_NODE_36562_length_297_cov_5.736607_g36063_i0 PRJNA608894 36562 297 5.736607 17.03772279 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 470 6.43e-128   NTclustered gi|2258818259|gb|CP060220.1| 2026715 g36063 i0 95.27 177.962962962963 296 14 99 0 1 296 3252537 3252242 MAG: Pseudobdellovibrionaceae bacterium isolate HK-STAS-BDEL-7 chromosome blastn 52855 470 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium
4975268 4975268 PRJNA608894_P_NODE_52064_length_249_cov_0.875000_g51565_i0 PRJNA608894 52064 249 0.875 2.17875 Bacteriovorax 146784 Bacteria Bacteria 455 1.47e-123   NTclustered gi|1700689994|gb|CP030035.1| 960 g51565 i0 99.598 238.666666666667 249 1 100 0 1 249 1661684 1661436 Bacteriovorax stolpii strain AC01 chromosome, complete genome blastn 59428 455 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Bacteriovorax Bacteriovorax stolpii
11350497 11350497 PRJNA608894_P_NODE_26369_length_367_cov_3.448980_g25872_i0 PRJNA608894 26369 367 3.44898 12.6577566 Bdellovibrio 958 Bacteria Bacteria 246 1.49e-60   NTclustered gi|578016248|gb|CP002190.1| 765869 g25872 i0 86.878 116.942779291553 221 27 60 2 84 304 611717 611499 Bdellovibrio bacteriovorus W, complete genome blastn 42918 248 0.991935483870968 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio bacteriovorus
25373332 25373332 PRJNA608894_P_NODE_15600_length_554_cov_2.835759_g15108_i0 PRJNA608894 15600 554 2.835759 15.71010486 Pseudobdellovibrionaceae 213483 Bacteria Bacteria 706 0   NTclustered gi|507148233|ref|NR_103040.1| 453816 g15108 i0 89.73 167.518050541516 555 53 99 4 3 554 621 1174 Bdellovibrio exovorus strain JSS 23S ribosomal RNA gene, complete sequence blastn 92805 713 0.990182328190743 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Pseudobdellovibrio Pseudobdellovibrio exovorus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;