RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA608894" and tax_phylum = "Bacillariophyta"

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tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA608894 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3136152 3136152 PRJNA608894_P_NODE_27483_length_357_cov_1.084507_g26984_i0 PRJNA608894 27483 357 1.084507 3.87168999 Pinnularia borealis complex sp. 2725370 SAR_Eukaryotes SAR_Eukaryotes 97.1 1.54e-15   NTclustered gi|1829658902|gb|MN940843.1| 2725370 g26984 i0 86.813 23.5882352941176 91 6 25 6 195 284 265 350 Pinnularia borealis complex sp. voucher SL16_23 28S ribosomal RNA gene, partial sequence blastn 8421 97.1 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Pinnulariaceae Pinnularia Pinnularia borealis complex sp.
4975260 4975260 PRJNA608894_P_NODE_49424_length_252_cov_1.486034_g48925_i0 PRJNA608894 49424 252 1.486034 3.74480568 Bacillariophyta 2836 SAR_Eukaryotes SAR_Eukaryotes 84.2 8.1e-12   NTclustered gi|1419234869|dbj|AP018512.1| 303400 g48925 i0 89.394 8.02777777777778 66 7 26 0 187 252 2684 2749 Nitzschia palea NIES-2729 mitochondrial DNA, nearly complete genome blastn 2023 84.2 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Bacillariales Bacillariaceae Nitzschia Nitzschia palea
14614103 14614103 PRJNA608894_P_NODE_20892_length_441_cov_1.896739_g20396_i0 PRJNA608894 20892 441 1.896739 8.36461899 Phaeodactylum tricornutum 2850 SAR_Eukaryotes SAR_Eukaryotes 318 3.81e-82   NTclustered gi|657012367|gb|KF302531.1| 2850 g20396 i0 85.574 4.29705215419501 305 42 69 2 1 304 90 393 Phaeodactylum tricornutum clone C443 40S ribosomal protein mRNA, partial cds blastn 1895 318 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Phaeodactylaceae Phaeodactylum Phaeodactylum tricornutum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;