RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA608894" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA608894 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1861037 1861037 PRJNA608894_P_NODE_19762_length_461_cov_5.618557_g19266_i0 PRJNA608894 19762 461 5.618557 25.90154777 Toxoplasma gondii 5811 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.045   NTclustered gi|820698309|tpe|LN714497.1| 432359 g19266 i0 87.5 0.10412147505423 48 3 10 2 309 353 3209104 3209151 TPA_asm: Toxoplasma gondii VEG, chromosome chrVIIb, complete genome blastn 48 52.8 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Toxoplasma Toxoplasma gondii
8238870 8238870 PRJNA608894_P_NODE_55567_length_245_cov_1.616279_g55068_i0 PRJNA608894 55567 245 1.616279 3.95988355 Babesia microti 5868 SAR_Eukaryotes SAR_Eukaryotes 78.7 3.65e-10   NTclustered gi|1206245954|ref|XR_002459985.1| 1133968 g55068 i0 94.118 0.416326530612245 51 3 21 0 171 221 1930 1980 Babesia microti strain RI 28S ribosomal RNA rRNA blastn 102 78.7 1 Eukaryota Sar   Apicomplexa Aconoidasida Piroplasmida Babesiidae Babesia Babesia microti
16449817 16449817 PRJNA608894_P_NODE_47373_length_258_cov_1.481081_g46874_i0 PRJNA608894 47373 258 1.481081 3.82118898 Sarcocystidae 5809 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.007   NTclustered gi|260232170|dbj|AK318169.1| 5811 g46874 i0 100 0.562015503875969 29 0 11 0 206 234 325 297 Toxoplasma gondii cDNA, clone: XTG09375.2, full cDNA, XTG Sugano cDNA library blastn 145 54.7 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Toxoplasma Toxoplasma gondii
19712082 19712082 PRJNA608894_P_NODE_40136_length_283_cov_1.138095_g39637_i0 PRJNA608894 40136 283 1.138095 3.22080885 Plasmodium falciparum 5833 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.026   NTclustered gi|124808974|ref|XM_001348420.1| 36329 g39637 i0 88.636 0.15547703180212 44 4 16 1 39 82 5576 5534 Plasmodium falciparum 3D7 acid phosphatase, putative (PF3D7_1430300), partial mRNA blastn 44 52.8 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium falciparum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;