RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA608894" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA608894 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10789607 10789607 PRJNA608894_P_NODE_33029_length_314_cov_2.684647_g32530_i0 PRJNA608894 33029 314 2.684647 8.42979158 Acidobacteriota bacterium 1978231 Bacteria Bacteria 342 1.5599999999999997e-89   NTclustered gi|1958093598|gb|CP065003.1| 1978231 g32530 i0 87.584 83.9713375796178 298 34 94 3 19 314 317557 317261 Acidobacteria bacterium isolate Kalu_18-Q3-R12-55_MAXAC.185_cln chromosome, complete genome blastn 26367 342 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
15888332 15888332 PRJNA608894_P_NODE_35473_length_303_cov_1.626087_g34974_i0 PRJNA608894 35473 303 1.626087 4.92704361 Vicinamibacterales bacterium 2910147 Bacteria Bacteria 206 2.05e-48   NTclustered gi|2621701418|emb|OY760136.1| 2910147 g34974 i0 80.97 178.376237623762 268 43 87 8 39 303 1699525 1699263 MAG: Vicinamibacterales bacterium isolate f9e760c9-8bbe-4e76-9a0a-40d6f1fb97b8 genome assembly, chromosome: 1 blastn 54048 206 1 Bacteria   Pseudomonadati Acidobacteriota Vicinamibacteria Vicinamibacterales     Vicinamibacterales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;