RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA608894" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 7 ✖

bioproject 1

  • PRJNA608894 · 7 ✖

analysis 1

  • blastn · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5689546 5689546 PRJNA608894_P_NODE_58525_length_242_cov_1.822485_g58026_i0 PRJNA608894 58525 242 1.822485 4.4104137 Chlamydomonas reinhardtii 3055 Plants Plants 73.1 1.67e-8   NTclustered gi|2082246007|ref|XM_001700625.2| 3055 g58026 i0 85.507 1.64876033057851 69 10 29 0 139 207 1709 1641 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_05g234639v5), mRNA blastn 399 73.1 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
6963397 6963397 PRJNA608894_P_NODE_19426_length_467_cov_2.692893_g18930_i0 PRJNA608894 19426 467 2.692893 12.57581031 Chlamydomonas reinhardtii 3055 Plants Plants 285 4.11e-72   NTclustered gi|2082248650|ref|XM_043063418.1| 3055 g18930 i0 84.158 59.3276231263383 303 38 64 9 1 298 560 857 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_06g290950v5), mRNA blastn 27706 285 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
9514277 9514277 PRJNA608894_P_NODE_58688_length_242_cov_1.443787_g58189_i0 PRJNA608894 58688 242 1.443787 3.49396454 Volvox carteri 3067 Plants Plants 147 9.72e-31   NTclustered gi|302837739|ref|XM_002950383.1| 3068 g58189 i0 82.456 51.0578512396694 171 27 69 1 75 242 111 281 Volvox carteri f. nagariensis uncharacterized protein (VOLCADRAFT_74602), mRNA blastn 12356 147 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Volvox Volvox carteri
14614140 14614140 PRJNA608894_P_NODE_22732_length_412_cov_1.669617_g22235_i0 PRJNA608894 22732 412 1.669617 6.87882204 Monoraphidium neglectum 145388 Plants Plants 278 5.999999999999999e-70   NTclustered gi|926795717|ref|XM_014050538.1| 145388 g22235 i0 83.333 66.9029126213592 300 50 73 0 99 398 61 360 Monoraphidium neglectum 40S ribosomal protein S20-1 mRNA blastn 27564 278 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium neglectum
19711924 19711924 PRJNA608894_P_NODE_31976_length_321_cov_2.032258_g31477_i0 PRJNA608894 31976 321 2.032258 6.52354818 Monoraphidium neglectum 145388 Plants Plants 143 1.74e-29   NTclustered gi|926781367|ref|XM_014043704.1| 145388 g31477 i0 80.874 0.570093457943925 183 33 57 2 4 185 303 122 Monoraphidium neglectum 60S ribosomal protein L26-1 mRNA blastn 183 143 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium neglectum
21549034 21549034 PRJNA608894_P_NODE_58557_length_242_cov_1.816568_g58058_i0 PRJNA608894 58557 242 1.816568 4.39609456 Chlamydomonas 3052 Plants Plants 132 2.7200000000000003e-26   NTclustered gi|18144|emb|X53574.1| 3055 g58058 i0 80.663 50.698347107438 181 25 73 9 67 242 1643 1468 C. reinhardtii Cblp gene for a G protein beta subunit-like polypeptide blastn 12269 132 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
24811706 24811706 PRJNA608894_P_NODE_35600_length_302_cov_2.641921_g35101_i0 PRJNA608894 35600 302 2.641921 7.97860142 Auxenochlorella protothecoides 3075 Plants Plants 54.7 0.008   NTclustered gi|760445178|ref|XM_011401356.1| 3075 g35101 i0 94.444 0.119205298013245 36 0 12 2 24 58 1404 1438 Auxenochlorella protothecoides Ubiquitin carboxyl-terminal hydrolase 7 partial mRNA blastn 36 54.7 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella protothecoides

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;