RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA608894" and tax_clade = "PVC group"

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tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • PVC group · 2 ✖

bioproject 1

  • PRJNA608894 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
585120 585120 PRJNA608894_P_NODE_22761_length_412_cov_0.787611_g22264_i0 PRJNA608894 22761 412 0.787611 3.24495732 Paludisphaera borealis 1387353 Bacteria Bacteria 654 0   NTclustered gi|1133581311|gb|CP019082.1| 1387353 g22264 i0 95.377 158.776699029126 411 19 99 0 2 412 121283 121693 Paludisphaera borealis strain PX4 chromosome, complete genome blastn 65416 654 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Isosphaerales Isosphaeraceae Paludisphaera Paludisphaera borealis
4975174 4975174 PRJNA608894_P_NODE_21364_length_432_cov_4.440111_g20868_i0 PRJNA608894 21364 432 4.440111 19.18127952 Prosthecobacter 48463 Bacteria Bacteria 776 0   NTclustered gi|12583974|gb|AF245378.1|AF245378 48464 g20868 i0 99.074 241.659722222222 432 4 100 0 1 432 190 621 Prosthecobacter fusiformis 23S ribosomal RNA gene, partial sequence blastn 104397 776 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Prosthecobacter Prosthecobacter fusiformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;