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contig_metadata

15 rows where analysis = "blastn", bioproject = "PRJNA608660" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 15 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA608660 · 15 ✖

analysis 1

  • blastn · 15 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3135561 3135561 PRJNA608660_P_NODE_29003_length_241_cov_3.666667_g28647_i0 PRJNA608660 29003 241 3.666667 8.83666747 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 366 6.82e-97   NTclustered gi|2874254040|emb|OY970364.1| 412056 g28647 i0 96.413 111.755186721992 223 7 92 1 10 231 2168001 2167779 MAG: uncultured Verrucomicrobiae bacterium isolate MFD04463.bin.c.15 genome assembly, chromosome: 1 blastn 26933 366 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
4975086 4975086 PRJNA608660_P_NODE_37884_length_196_cov_2.476190_g37528_i0 PRJNA608660 37884 196 2.47619 4.8533324 Verrucomicrobiales 48461 Bacteria Bacteria 327 2.52e-85   NTclustered gi|2022020957|gb|CP059069.1| 2562705 g37528 i0 96.939 576.765306122449 196 4 100 2 1 196 3411587 3411394 Akkermansiaceae bacterium strain AJA081-3 chromosome, complete genome blastn 113046 327 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Akkermansiaceae   Akkermansiaceae bacterium
8237739 8237739 PRJNA608660_P_NODE_26087_length_261_cov_1.641509_g25731_i0 PRJNA608660 26087 261 1.641509 4.28433849 Prosthecobacter fusiformis 48464 Bacteria Bacteria 259 1.31e-64   NTclustered gi|12583974|gb|AF245378.1|AF245378 48464 g25731 i0 86.364 124.766283524904 242 28 92 5 16 255 489 251 Prosthecobacter fusiformis 23S ribosomal RNA gene, partial sequence blastn 32564 259 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Prosthecobacter Prosthecobacter fusiformis
10788804 10788804 PRJNA608660_P_NODE_15889_length_365_cov_2.234177_g15535_i0 PRJNA608660 15889 365 2.234177 8.15474605 Pedosphaera parvula 1032527 Bacteria Bacteria 501 2.86e-137   NTclustered gi|183579829|emb|AM905426.1| 320771 g15535 i0 93.023 228.057534246575 344 23 94 1 14 357 1074 732 Bacterium Ellin514 23S rRNA gene, isolate Ellin514 blastn 83241 501 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Pedosphaerae Pedosphaerales Pedosphaeraceae Pedosphaera Pedosphaera parvula
10789051 10789051 PRJNA608660_P_NODE_43529_length_175_cov_2.238095_g43172_i0 PRJNA608660 43529 175 2.238095 3.91666625 uncultured Verrucomicrobiota bacterium 156588 Bacteria Bacteria 265 1.74e-66   NTclustered gi|781846438|emb|LN807658.1| 156588 g43172 i0 96.835 89.5371428571429 158 5 90 0 8 165 260 103 Uncultured Verrucomicrobia bacterium partial 16S rRNA gene, clone denovo5009 blastn 15669 265 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         uncultured Verrucomicrobiota bacterium
12064312 12064312 PRJNA608660_P_NODE_9570_length_482_cov_3.115473_g9227_i0 PRJNA608660 9570 482 3.115473 15.01657986 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 553 1.0599999999999995e-152   NTclustered gi|2874254040|emb|OY970364.1| 412056 g9227 i0 98.714 153.653526970954 311 4 98 0 6 316 2168484 2168174 MAG: uncultured Verrucomicrobiae bacterium isolate MFD04463.bin.c.15 genome assembly, chromosome: 1 blastn 74061 553 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
12625994 12625994 PRJNA608660_P_NODE_48230_length_164_cov_2.713043_g47873_i0 PRJNA608660 48230 164 2.713043 4.44939052 root 1 Root_unresolved Root_unresolved 303 3.42e-78   NTclustered gi|1774728408|gb|MN684281.1| 2736 g47873 i0 100 99.8780487804878 164 0 100 0 1 164 561 724 Verrucomicrobium spinosum strain MT_SG_E_24_27F.27F 16S ribosomal RNA gene, partial sequence blastn 16380 303 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Verrucomicrobium Verrucomicrobium spinosum
14613454 14613454 PRJNA608660_P_NODE_10152_length_468_cov_3.677804_g9807_i0 PRJNA608660 10152 468 3.677804 17.21212272 uncultured Verrucomicrobiota bacterium 156588 Bacteria Bacteria 780 0   NTclustered gi|109727764|gb|DQ648945.1| 156588 g9807 i0 99.304 91.1965811965812 431 3 92 0 37 467 700 270 Uncultured Verrucomicrobia bacterium clone lhac19 16S ribosomal RNA gene, partial sequence blastn 42680 780 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         uncultured Verrucomicrobiota bacterium
15887637 15887637 PRJNA608660_P_NODE_33933_length_214_cov_2.139394_g33577_i0 PRJNA608660 33933 214 2.139394 4.57830316 Luteolibacter sp. SL250 2995170 Bacteria Bacteria 357 3.5699999999999996e-94   NTclustered gi|2381117106|gb|CP113054.1| 2995170 g33577 i0 96.729 285.915887850467 214 7 100 0 1 214 2106 2319 Luteolibacter sp. SL250 chromosome blastn 61186 357 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter sp. SL250
16449679 16449679 PRJNA608660_P_NODE_48193_length_164_cov_6.330435_g47836_i0 PRJNA608660 48193 164 6.330435 10.3819134 Luteolibacter 518753 Bacteria Bacteria 100 4.82e-17   NTclustered gi|1835317346|gb|CP051774.1| 2728835 g47836 i0 89.744 29.6341463414634 78 8 48 0 12 89 3804938 3805015 Luteolibacter luteus strain G-1-1-1 chromosome, complete genome blastn 4860 100 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter luteus
17162311 17162311 PRJNA608660_P_NODE_19654_length_319_cov_3.425926_g19298_i0 PRJNA608660 19654 319 3.425926 10.92870394 Luteolibacter sp. SL250 2995170 Bacteria Bacteria 448 3.2599999999999995e-121   NTclustered gi|2381117106|gb|CP113054.1| 2995170 g19298 i0 93.377 275.391849529781 302 20 95 0 18 319 1693 1392 Luteolibacter sp. SL250 chromosome blastn 87850 448 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter sp. SL250
19711194 19711194 PRJNA608660_P_NODE_22336_length_293_cov_1.274590_g21980_i0 PRJNA608660 22336 293 1.27459 3.7345487 uncultured Verrucomicrobiota bacterium 156588 Bacteria Bacteria 470 6.33e-128   NTclustered gi|300679520|gb|HM238178.1| 156588 g21980 i0 98.141 92.7133105802048 269 5 92 0 10 278 670 938 Uncultured Verrucomicrobia bacterium clone BF_178 16S ribosomal RNA gene, partial sequence blastn 27165 470 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         uncultured Verrucomicrobiota bacterium
20986914 20986914 PRJNA608660_P_NODE_19177_length_325_cov_1.688406_g18821_i0 PRJNA608660 19177 325 1.688406 5.4873195 Candidatus Xiphinematobacter sp. 1903058 Bacteria Bacteria 388 2.05e-103   NTclustered gi|1966854496|gb|CP068475.1| 1903058 g18821 i0 88.379 89.3907692307692 327 32 99 6 2 324 915387 915063 MAG: Candidatus Xiphinematobacter sp. isolate P21 chromosome, complete genome blastn 29052 388 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria     Candidatus Xiphinematobacter Candidatus Xiphinematobacter sp.
22261817 22261817 PRJNA608660_P_NODE_3198_length_772_cov_10.845090_g2958_i0 PRJNA608660 3198 772 10.84509 83.7240948 Prosthecobacter vanneervenii 48466 Bacteria Bacteria 826 0   NTclustered gi|164510704|emb|AJ966883.1| 48466 g2958 i0 86.667 275.414507772021 750 95 97 5 13 760 4113 4859 Prosthecobacter vanneervenii 16S rRNA gene (partial), 23S rRNA gene, tRNA-Ala gene, tRNA-Ile gene, ITS1 and ITS2, strain DSM 12252 blastn 212620 826 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Prosthecobacter Prosthecobacter vanneervenii
22261852 22261852 PRJNA608660_P_NODE_35578_length_206_cov_2.974522_g35222_i0 PRJNA608660 35578 206 2.974522 6.12751532 Verrucomicrobia bacterium IMCC26134 1637999 Bacteria Bacteria 196 7.86e-46   NTclustered gi|807238858|gb|CP011265.1| 1637999 g35222 i0 90.196 171.834951456311 153 12 74 3 44 195 1902810 1902660 Verrucomicrobia bacterium IMCC26134, complete genome blastn 35398 196 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobia bacterium IMCC26134

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;