RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA608660" and tax_phylum = "Nitrospirota"

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tax_superkingdom 1

tax_phylum 1

  • Nitrospirota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA608660 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4412161 4412161 PRJNA608660_P_NODE_15884_length_365_cov_2.541139_g15530_i0 PRJNA608660 15884 365 2.541139 9.27515735 Nitrospira moscoviensis 42253 Bacteria Bacteria 540 6.06e-149   NTclustered gi|922305621|gb|CP011801.1| 42253 g15530 i0 95.044 211.619178082192 343 17 94 0 10 352 1277252 1277594 Nitrospira moscoviensis strain NSP M-1, complete genome blastn 77241 540 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira moscoviensis
4412465 4412465 PRJNA608660_P_NODE_48184_length_164_cov_8.956522_g47827_i0 PRJNA608660 48184 164 8.956522 14.68869608 Nitrospirota bacterium 2026887 Bacteria Bacteria 235 1.27e-57   NTclustered gi|2621702110|emb|OY760142.1| 2026887 g47827 i0 95.862 357.493902439024 145 6 88 0 9 153 1460311 1460455 MAG: Nitrospirota bacterium isolate 41fe4016-ed88-40a2-aca4-2b8d86c50af7 genome assembly, chromosome: 1 blastn 58629 235 1 Bacteria   Pseudomonadati Nitrospirota         Nitrospirota bacterium
7524693 7524693 PRJNA608660_P_NODE_20086_length_314_cov_7.671698_g19730_i0 PRJNA608660 20086 314 7.671698 24.08913172 Nitrospira 1234 Bacteria Bacteria 503 6.75e-138   NTclustered gi|922305621|gb|CP011801.1| 42253 g19730 i0 96.104 270.127388535032 308 12 98 0 1 308 1278063 1278370 Nitrospira moscoviensis strain NSP M-1, complete genome blastn 84820 508 0.990157480314961 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira moscoviensis
8237587 8237587 PRJNA608660_P_NODE_1007_length_1119_cov_15.976636_g872_i0 PRJNA608660 1007 1119 15.976636 178.77855684 Nitrospira moscoviensis 42253 Bacteria Bacteria 1725 0   NTclustered gi|922305621|gb|CP011801.1| 42253 g872 i0 94.995 441.078641644325 1099 55 98 0 10 1108 1278005 1279103 Nitrospira moscoviensis strain NSP M-1, complete genome blastn 493567 1725 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira moscoviensis
13900973 13900973 PRJNA608660_P_NODE_50991_length_152_cov_8.961165_g50634_i0 PRJNA608660 50991 152 8.961165 13.6209708 Nitrospira 1234 Bacteria Bacteria 243 6.87e-60   NTclustered gi|922305621|gb|CP011801.1| 42253 g50634 i0 97.857 104.092105263158 140 3 92 0 11 150 1279712 1279573 Nitrospira moscoviensis strain NSP M-1, complete genome blastn 15822 243 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira moscoviensis
21548851 21548851 PRJNA608660_P_NODE_36897_length_200_cov_5.529801_g36541_i0 PRJNA608660 36897 200 5.529801 11.059602 Nitrospira 1234 Bacteria Bacteria 255 1.23e-63   NTclustered gi|2863125063|dbj|AP038805.1| 70125 g36541 i0 98.611 130.175 144 2 100 0 57 200 2094146 2094289 MAG: Nitrospira sp. AFB01 DNA, complete genome blastn 26035 255 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;