RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA608660" and tax_phylum = "Bdellovibrionota"

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tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 7 ✖

tax_kingdom 1

bioproject 1

  • PRJNA608660 · 7 ✖

analysis 1

  • blastn · 7 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1860814 1860814 PRJNA608660_P_NODE_5282_length_634_cov_6.505983_g4981_i0 PRJNA608660 5282 634 6.505983 41.24793222 Bdellovibrio sp. qaytius 1916293 Bacteria Bacteria 254 1.61e-62   NTclustered gi|1552089877|gb|CP025734.1| 1916293 g4981 i0 82.807 0.449526813880126 285 48 45 1 33 317 2130176 2130459 Bdellovibrio sp. qaytius chromosome, complete genome blastn 285 254 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. qaytius
2422105 2422105 PRJNA608660_P_NODE_12622_length_417_cov_2.695652_g12274_i0 PRJNA608660 12622 417 2.695652 11.24086884 Bacteriovorax 146784 Bacteria Bacteria 678 0   NTclustered gi|1700689994|gb|CP030035.1| 960 g12274 i0 96.798 95.4460431654676 406 13 97 0 4 409 1661573 1661978 Bacteriovorax stolpii strain AC01 chromosome, complete genome blastn 39801 678 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Bacteriovorax Bacteriovorax stolpii
12625895 12625895 PRJNA608660_P_NODE_19130_length_325_cov_4.094203_g18774_i0 PRJNA608660 19130 325 4.094203 13.30615975 Peredibacter 263370 Bacteria Bacteria 545 1.15e-150   NTclustered gi|2631252187|gb|CP139487.1| 28202 g18774 i0 98.697 179.104615384615 307 4 94 0 19 325 511414 511108 Peredibacter starrii strain A3.12 chromosome, complete genome blastn 58209 545 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter starrii
13338635 13338635 PRJNA608660_P_NODE_13611_length_399_cov_3.380000_g13260_i0 PRJNA608660 13611 399 3.38 13.4862 Peredibacter starrii 28202 Bacteria Bacteria 640 6.41e-179   NTclustered gi|2631252187|gb|CP139487.1| 28202 g13260 i0 96.632 9.3734335839599 386 11 96 2 15 399 512477 512093 Peredibacter starrii strain A3.12 chromosome, complete genome blastn 3740 640 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter starrii
13338861 13338861 PRJNA608660_P_NODE_35471_length_207_cov_1.417722_g35115_i0 PRJNA608660 35471 207 1.417722 2.93468454 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 191 3.68e-44   NTclustered gi|2258818259|gb|CP060220.1| 2026715 g35115 i0 83.824 85.8937198067633 204 30 98 3 1 203 3251773 3251572 MAG: Pseudobdellovibrionaceae bacterium isolate HK-STAS-BDEL-7 chromosome blastn 17780 191 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium
22261795 22261795 PRJNA608660_P_NODE_29938_length_236_cov_1.598930_g29582_i0 PRJNA608660 29938 236 1.59893 3.7734748 Bdellovibrio sp. HCB-162 3394234 Bacteria Bacteria 233 7.039999999999999e-57   NTclustered gi|2898207634|gb|CP178861.1| 3394234 g29582 i0 85.088 0.966101694915254 228 34 97 0 1 228 1628321 1628094 Bdellovibrio sp. HCB-162 chromosome, complete genome blastn 228 233 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. HCB-162
23536981 23536981 PRJNA608660_P_NODE_1119_length_1087_cov_6.196532_g974_i0 PRJNA608660 1119 1087 6.196532 67.35630284 Bdellovibrio sp. qaytius 1916293 Bacteria Bacteria 859 0   NTclustered gi|1552089877|gb|CP025734.1| 1916293 g974 i0 85.766 136.804047838086 829 98 75 18 257 1075 666868 666050 Bdellovibrio sp. qaytius chromosome, complete genome blastn 148706 859 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. qaytius

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;