contig_metadata
16 rows where analysis = "blastn", bioproject = "PRJNA608660" and tax_kingdom = "Fusobacteriati"
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| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1860426 | 1860426 | PRJNA608660_P_NODE_11922_length_430_cov_2.230971_g11575_i0 | PRJNA608660 | 11922 | 430 | 2.230971 | 9.5931753 | Leptotrichia wadei | 157687 | Bacteria | Bacteria | 763 | 0 | NTclustered | gi|1708582457|dbj|AP019841.1| | 157687 | g11575 | i0 | 99.289 | 198.476744186047 | 422 | 3 | 98 | 0 | 1 | 422 | 2298807 | 2299228 | Leptotrichia wadei JMUB3936 DNA, complete genome | blastn | 85345 | 763 | 1 | Bacteria | Fusobacteriati | Fusobacteriota | Fusobacteriia | Fusobacteriales | Leptotrichiaceae | Leptotrichia | Leptotrichia wadei | ||
| 3135748 | 3135748 | PRJNA608660_P_NODE_51063_length_152_cov_2.553398_g50706_i0 | PRJNA608660 | 51063 | 152 | 2.553398 | 3.88116496 | Leptotrichia sp. oral taxon 218 | 712361 | Bacteria | Bacteria | 244 | 1.91e-60 | NTclustered | gi|2028887161|gb|CP072377.1| | 712361 | g50706 | i0 | 99.259 | 335.315789473684 | 135 | 1 | 89 | 0 | 7 | 141 | 2873 | 2739 | Leptotrichia sp. oral taxon 218 strain F0707 chromosome, complete genome | blastn | 50968 | 244 | 1 | Bacteria | Fusobacteriati | Fusobacteriota | Fusobacteriia | Fusobacteriales | Leptotrichiaceae | Leptotrichia | Leptotrichia sp. oral taxon 218 | ||
| 4412223 | 4412223 | PRJNA608660_P_NODE_22184_length_294_cov_2.510204_g21828_i0 | PRJNA608660 | 22184 | 294 | 2.510204 | 7.37999976 | Leptotrichia wadei | 157687 | Bacteria | Bacteria | 460 | 3.82e-125 | NTclustered | gi|1791353085|dbj|AP019829.2| | 157687 | g21828 | i0 | 99.216 | 343.792517006803 | 255 | 2 | 88 | 0 | 7 | 261 | 2202765 | 2203019 | Leptotrichia wadei JCM16777 DNA, complete genome | blastn | 101075 | 460 | 1 | Bacteria | Fusobacteriati | Fusobacteriota | Fusobacteriia | Fusobacteriales | Leptotrichiaceae | Leptotrichia | Leptotrichia wadei | ||
| 4975085 | 4975085 | PRJNA608660_P_NODE_37704_length_197_cov_1.837838_g37348_i0 | PRJNA608660 | 37704 | 197 | 1.837838 | 3.62054086 | Streptobacillus | 34104 | Bacteria | Bacteria | 303 | 4.27e-78 | NTclustered | gi|470485174|ref|NR_076688.1| | 34105 | g37348 | i0 | 94.444 | 337.324873096447 | 198 | 9 | 100 | 2 | 1 | 197 | 2260 | 2064 | Streptobacillus moniliformis strain DSM 12112 23S ribosomal RNA gene, complete sequence | blastn | 66453 | 303 | 1 | Bacteria | Fusobacteriati | Fusobacteriota | Fusobacteriia | Fusobacteriales | Leptotrichiaceae | Streptobacillus | Streptobacillus moniliformis | ||
| 5688352 | 5688352 | PRJNA608660_P_NODE_26365_length_259_cov_1.423810_g26009_i0 | PRJNA608660 | 26365 | 259 | 1.42381 | 3.6876679 | Leptotrichia shahii | 157691 | Bacteria | Bacteria | 438 | 1.5499999999999996e-118 | NTclustered | gi|1708568515|dbj|AP019827.1| | 157691 | g26009 | i0 | 100 | 418.783783783784 | 237 | 0 | 93 | 0 | 13 | 249 | 95255 | 95019 | Leptotrichia shahii JCM16776 DNA, complete genome | blastn | 108465 | 438 | 1 | Bacteria | Fusobacteriati | Fusobacteriota | Fusobacteriia | Fusobacteriales | Leptotrichiaceae | Leptotrichia | Leptotrichia shahii | ||
| 8799872 | 8799872 | PRJNA608660_P_NODE_727_length_1231_cov_12.404399_g241_i1 | PRJNA608660 | 727 | 1231 | 12.404399 | 152.69815169 | Fusobacterium | 848 | Bacteria | Bacteria | 2202 | 0 | NTclustered | gi|2445153921|gb|CP117797.1| | 851 | g241 | i1 | 99.182 | 493.93582453290003 | 1222 | 10 | 99 | 0 | 1 | 1222 | 2399235 | 2398014 | Fusobacterium nucleatum strain FNA chromosome, complete genome | blastn | 608035 | 2218 | 0.992786293958521 | Bacteria | Fusobacteriati | Fusobacteriota | Fusobacteriia | Fusobacteriales | Fusobacteriaceae | Fusobacterium | Fusobacterium nucleatum | ||
| 9513079 | 9513079 | PRJNA608660_P_NODE_28408_length_245_cov_2.051020_g28052_i0 | PRJNA608660 | 28408 | 245 | 2.05102 | 5.024999 | uncultured Fusobacterium sp. | 159267 | Bacteria | Bacteria | 416 | 6.809999999999998e-112 | NTclustered | gi|295646929|gb|GU902727.1| | 159267 | g28052 | i0 | 99.561 | 93.0612244897959 | 228 | 1 | 93 | 0 | 12 | 239 | 63 | 290 | Uncultured Fusobacterium sp. clone PP209-b08 16S ribosomal RNA gene, partial sequence | blastn | 22800 | 416 | 1 | Bacteria | Fusobacteriati | Fusobacteriota | Fusobacteriia | Fusobacteriales | Fusobacteriaceae | Fusobacterium | uncultured Fusobacterium sp. | ||
| 9513299 | 9513299 | PRJNA608660_P_NODE_7448_length_546_cov_3.786720_g7117_i0 | PRJNA608660 | 7448 | 546 | 3.78672 | 20.6754912 | Leptotrichia sp. oral taxon 212 | 712357 | Bacteria | Bacteria | 833 | 0 | NTclustered | gi|922689899|gb|CP012410.1| | 712357 | g7117 | i0 | 94.934 | 433.981684981685 | 533 | 25 | 97 | 2 | 15 | 546 | 52172 | 51641 | Leptotrichia sp. oral taxon 212 strain W10393, complete genome | blastn | 236954 | 833 | 1 | Bacteria | Fusobacteriati | Fusobacteriota | Fusobacteriia | Fusobacteriales | Leptotrichiaceae | Leptotrichia | Leptotrichia sp. oral taxon 212 | ||
| 12625894 | 12625894 | PRJNA608660_P_NODE_18710_length_330_cov_2.302491_g18354_i0 | PRJNA608660 | 18710 | 330 | 2.302491 | 7.5982203 | Fusobacterium | 848 | Bacteria | Bacteria | 544 | 4.1999999999999997e-150 | NTclustered | gi|2705020071|gb|CP084132.1| | 851 | g18354 | i0 | 99.01 | 434.375757575758 | 303 | 3 | 99 | 0 | 3 | 305 | 105963 | 105661 | Fusobacterium nucleatum strain KCOM3713 chromosome, complete genome | blastn | 143344 | 544 | 1 | Bacteria | Fusobacteriati | Fusobacteriota | Fusobacteriia | Fusobacteriales | Fusobacteriaceae | Fusobacterium | Fusobacterium nucleatum | ||
| 20987225 | 20987225 | PRJNA608660_P_NODE_49397_length_162_cov_7.955752_g49040_i0 | PRJNA608660 | 49397 | 162 | 7.955752 | 12.88831824 | Leptotrichia sp. oral taxon 212 | 712357 | Bacteria | Bacteria | 209 | 7.56e-50 | NTclustered | gi|922689899|gb|CP012410.1| | 712357 | g49040 | i0 | 91.503 | 419.314814814815 | 153 | 12 | 94 | 1 | 11 | 162 | 53730 | 53882 | Leptotrichia sp. oral taxon 212 strain W10393, complete genome | blastn | 67929 | 209 | 1 | Bacteria | Fusobacteriati | Fusobacteriota | Fusobacteriia | Fusobacteriales | Leptotrichiaceae | Leptotrichia | Leptotrichia sp. oral taxon 212 | ||
| 21548895 | 21548895 | PRJNA608660_P_NODE_50237_length_159_cov_4.500000_g49880_i0 | PRJNA608660 | 50237 | 159 | 4.5 | 7.155 | Fusobacterium | 848 | Bacteria | Bacteria | 248 | 1.5599999999999998e-61 | NTclustered | gi|2705042081|gb|CP085192.1| | 856 | g49880 | i0 | 100 | 447.522012578616 | 134 | 0 | 84 | 0 | 13 | 146 | 3422613 | 3422480 | Fusobacterium varium strain SB069 chromosome | blastn | 71156 | 248 | 1 | Bacteria | Fusobacteriati | Fusobacteriota | Fusobacteriia | Fusobacteriales | Fusobacteriaceae | Fusobacterium | Fusobacterium varium | ||
| 22261829 | 22261829 | PRJNA608660_P_NODE_32818_length_220_cov_1.216374_g32462_i0 | PRJNA608660 | 32818 | 220 | 1.216374 | 2.6760228 | Fusobacterium polymorphum | 76857 | Bacteria | Bacteria | 285 | 1.7599999999999998e-72 | NTclustered | gi|2706407748|gb|CP077116.1| | 76857 | g32462 | i0 | 94.565 | 84.5272727272727 | 184 | 10 | 84 | 0 | 37 | 220 | 898342 | 898525 | Fusobacterium polymorphum strain KCOM1257 chromosome, complete genome | blastn | 18596 | 285 | 1 | Bacteria | Fusobacteriati | Fusobacteriota | Fusobacteriia | Fusobacteriales | Fusobacteriaceae | Fusobacterium | Fusobacterium polymorphum | ||
| 23537108 | 23537108 | PRJNA608660_P_NODE_2279_length_867_cov_19.953545_g2076_i0 | PRJNA608660 | 2279 | 867 | 19.953545 | 172.99723515 | Leptotrichia sp. oral taxon 212 | 712357 | Bacteria | Bacteria | 824 | 0 | NTclustered | gi|922689899|gb|CP012410.1| | 712357 | g2076 | i0 | 96.579 | 468.617070357555 | 497 | 17 | 98 | 0 | 361 | 857 | 52429 | 52925 | Leptotrichia sp. oral taxon 212 strain W10393, complete genome | blastn | 406291 | 824 | 1 | Bacteria | Fusobacteriati | Fusobacteriota | Fusobacteriia | Fusobacteriales | Leptotrichiaceae | Leptotrichia | Leptotrichia sp. oral taxon 212 | ||
| 23537248 | 23537248 | PRJNA608660_P_NODE_38879_length_192_cov_2.622378_g38523_i0 | PRJNA608660 | 38879 | 192 | 2.622378 | 5.03496576 | Leptotrichia sp. oral taxon 212 | 712357 | Bacteria | Bacteria | 309 | 8.890000000000001e-80 | NTclustered | gi|922689899|gb|CP012410.1| | 712357 | g38523 | i0 | 95.812 | 369.880208333333 | 191 | 8 | 99 | 0 | 2 | 192 | 53486 | 53296 | Leptotrichia sp. oral taxon 212 strain W10393, complete genome | blastn | 71017 | 309 | 1 | Bacteria | Fusobacteriati | Fusobacteriota | Fusobacteriia | Fusobacteriales | Leptotrichiaceae | Leptotrichia | Leptotrichia sp. oral taxon 212 | ||
| 24811085 | 24811085 | PRJNA608660_P_NODE_39340_length_191_cov_1.098592_g38983_i0 | PRJNA608660 | 39340 | 191 | 1.098592 | 2.09831072 | Fusobacterium polymorphum | 76857 | Bacteria | Bacteria | 353 | 4.02e-93 | NTclustered | gi|2706424020|gb|CP077136.1| | 76857 | g38983 | i0 | 100 | 99.8272251308901 | 191 | 0 | 100 | 0 | 1 | 191 | 174340 | 174530 | Fusobacterium polymorphum strain KCOM3036 chromosome, complete genome | blastn | 19067 | 353 | 1 | Bacteria | Fusobacteriati | Fusobacteriota | Fusobacteriia | Fusobacteriales | Fusobacteriaceae | Fusobacterium | Fusobacterium polymorphum | ||
| 25373214 | 25373214 | PRJNA608660_P_NODE_300_length_1592_cov_17.362929_g241_i0 | PRJNA608660 | 300 | 1592 | 17.362929 | 276.41782968 | Fusobacterium | 848 | Bacteria | Bacteria | 2591 | 0 | NTclustered | gi|2705038125|gb|CP084158.1| | 851 | g241 | i0 | 98.7 | 449.277010050251 | 1462 | 15 | 92 | 3 | 133 | 1592 | 1990892 | 1992351 | Fusobacterium nucleatum strain KCOM2312 chromosome, complete genome | blastn | 715249 | 2608 | 0.993481595092024 | Bacteria | Fusobacteriati | Fusobacteriota | Fusobacteriia | Fusobacteriales | Fusobacteriaceae | Fusobacterium | Fusobacterium nucleatum |
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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;