RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA608660" and tax_clade = "Discoba"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Discoba · 4 ✖

bioproject 1

  • PRJNA608660 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1147041 1147041 PRJNA608660_P_NODE_45841_length_168_cov_3.453782_g45484_i0 PRJNA608660 45841 168 3.453782 5.80235376 Kinetoplastea 5653 Euglenozoa other_Eukaryota 287 3.55e-73   NTclustered gi|59891965|gb|AY753625.1| 313291 g45484 i0 100 67.6547619047619 155 0 92 0 1 155 754 908 Bodonidae sp. Pan2 18S ribosomal RNA gene, partial sequence blastn 11366 287 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Eubodonida Bodonidae   Bodonidae sp. Pan2
13338922 13338922 PRJNA608660_P_NODE_42391_length_179_cov_2.169231_g42034_i0 PRJNA608660 42391 179 2.169231 3.88292349 Petalomonas acorensis 2529306 Euglenozoa other_Eukaryota 196 6.62e-46   NTclustered gi|1580982997|gb|MK564754.1| 2529306 g42034 i0 88.82 69.2234636871508 161 16 89 2 13 172 320 479 Petalomonas acorensis strain HFCC220 small subunit ribosomal RNA gene, partial sequence blastn 12391 196 1 Eukaryota Discoba   Euglenozoa Euglenida Petalomonadida Scytomonadidae Petalomonas Petalomonas acorensis
18998354 18998354 PRJNA608660_P_NODE_31115_length_229_cov_1.644444_g30759_i0 PRJNA608660 31115 229 1.644444 3.76577676 Entosiphon 101492 Euglenozoa other_Eukaryota 126 1.19e-24   NTclustered gi|37542663|gb|AY061999.1| 101493 g30759 i0 96.104 3.21397379912664 77 3 34 0 140 216 1712 1636 Entosiphon sulcatum small subunit ribosomal RNA gene, partial sequence blastn 736 126 1 Eukaryota Discoba   Euglenozoa Euglenida Heteronematales Peranemataceae Entosiphon Entosiphon sulcatum
23537222 23537222 PRJNA608660_P_NODE_36179_length_204_cov_1.006452_g35823_i0 PRJNA608660 36179 204 1.006452 2.05316208 Naegleria fowleri 5763 Heterolobosea other_Eukaryota 97.1 8.11e-16   NTclustered gi|2031938879|emb|OD957452.1| 5763 g35823 i0 100 14.2696078431373 52 0 25 0 1 52 603 552 Naegleria fowleri Karachi_NF001 strain blastn 2911 97.1 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;