RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA606583" and tax_phylum = "Chloroflexota"

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tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA606583 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1859473 1859473 PRJNA606583_P_NODE_29162_length_198_cov_1.453416_g28733_i0 PRJNA606583 29162 198 1.453416 2.87776368 uncultured Chloroflexia bacterium 1672391 Bacteria Bacteria 209 9.63e-50   NTclustered gi|2874253860|emb|OY969916.1| 1672391 g28733 i0 87.5 6.03030303030303 184 19 92 4 15 196 274329 274510 MAG: uncultured Chloroflexia bacterium isolate MFD01916.bin.3.39 genome assembly, chromosome: 1 blastn 1194 209 1 Bacteria   Bacillati Chloroflexota Chloroflexia       uncultured Chloroflexia bacterium
5687299 5687299 PRJNA606583_P_NODE_31445_length_187_cov_1.086667_g31016_i0 PRJNA606583 31445 187 1.086667 2.03206729 uncultured Chloroflexia bacterium 1672391 Bacteria Bacteria 237 4.12e-58   NTclustered gi|2874254102|emb|OY970185.1| 1672391 g31016 i0 93.671 110.005347593583 158 10 84 0 1 158 1857619 1857776 MAG: uncultured Chloroflexia bacterium isolate MFD06435.bin.c.3 genome assembly, chromosome: 1 blastn 20571 237 1 Bacteria   Bacillati Chloroflexota Chloroflexia       uncultured Chloroflexia bacterium
10787812 10787812 PRJNA606583_P_NODE_19849_length_269_cov_1.978448_g19420_i0 PRJNA606583 19849 269 1.978448 5.32202512 uncultured Chloroflexia bacterium 1672391 Bacteria Bacteria 193 1.39e-44   NTclustered gi|2874253860|emb|OY969916.1| 1672391 g19420 i0 80.297 6.55018587360595 269 41 97 9 3 264 273068 273331 MAG: uncultured Chloroflexia bacterium isolate MFD01916.bin.3.39 genome assembly, chromosome: 1 blastn 1762 193 1 Bacteria   Bacillati Chloroflexota Chloroflexia       uncultured Chloroflexia bacterium
13337804 13337804 PRJNA606583_P_NODE_5971_length_555_cov_3.395753_g5567_i0 PRJNA606583 5971 555 3.395753 18.84642915 Dehalococcoidia bacterium 2026734 Bacteria Bacteria 202 5.129999999999999e-47   NTclustered gi|2621701384|emb|OY760104.1| 2026734 g5567 i0 77.062 44.9189189189189 388 65 68 21 179 555 3255281 3254907 MAG: Dehalococcoidia bacterium isolate 85321599-0a94-4039-bbde-d148f9b3e6b5 genome assembly, chromosome: 1 blastn 24930 202 1 Bacteria   Bacillati Chloroflexota Dehalococcoidia       Dehalococcoidia bacterium
18435622 18435622 PRJNA606583_P_NODE_19015_length_278_cov_1.294606_g18586_i0 PRJNA606583 19015 278 1.294606 3.59900468 uncultured Chloroflexia bacterium 1672391 Bacteria Bacteria 241 5.09e-59   NTclustered gi|2874253860|emb|OY969916.1| 1672391 g18586 i0 82.5 119.032374100719 280 44 100 4 1 278 274974 274698 MAG: uncultured Chloroflexia bacterium isolate MFD01916.bin.3.39 genome assembly, chromosome: 1 blastn 33091 241 1 Bacteria   Bacillati Chloroflexota Chloroflexia       uncultured Chloroflexia bacterium
20985857 20985857 PRJNA606583_P_NODE_17097_length_300_cov_2.049430_g16668_i0 PRJNA606583 17097 300 2.04943 6.14829 uncultured Chloroflexia bacterium 1672391 Bacteria Bacteria 274 5.47e-69   NTclustered gi|2874253766|emb|OY969711.1| 1672391 g16668 i0 83.66 134.64 306 34 99 15 1 299 239575 239871 MAG: uncultured Chloroflexia bacterium isolate MFD09730.bin.c.1 genome assembly, chromosome: 1 blastn 40392 274 1 Bacteria   Bacillati Chloroflexota Chloroflexia       uncultured Chloroflexia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;