RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA605033" and tax_phylum = "Thermodesulfobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA605033 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
582927 582927 PRJNA605033_P_NODE_54941_length_232_cov_5.908629_g53373_i0 PRJNA605033 54941 232 5.908629 13.70801928 Desulfatibacillum aliphaticivorans 218208 Bacteria Bacteria 75 4.43e-9   NTclustered gi|218759244|gb|CP001322.1| 218208 g53373 i0 97.674 0.185344827586207 43 1 19 0 152 194 2833497 2833455 Desulfatibacillum aliphaticivorans strain AK-01, complete genome blastn 43 75 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfatibacillaceae Desulfatibacillum Desulfatibacillum aliphaticivorans
1857959 1857959 PRJNA605033_P_NODE_197722_length_167_cov_1.113636_g196153_i0 PRJNA605033 197722 167 1.113636 1.85977212 Desulfosarcina alkanivorans 571177 Bacteria Bacteria 52.8 0.014   NTclustered gi|1773409569|dbj|AP021874.1| 571177 g196153 i0 100 0.167664670658683 28 0 17 0 2 29 5802817 5802844 Desulfosarcina alkanivorans PL12 DNA, complete genome blastn 28 52.8 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfosarcinaceae Desulfosarcina Desulfosarcina alkanivorans
13899709 13899709 PRJNA605033_P_NODE_55971_length_231_cov_2.806122_g54403_i0 PRJNA605033 55971 231 2.806122 6.48214182 Nitratidesulfovibrio 2802295 Bacteria Bacteria 93.5 1.22e-14   NTclustered gi|2431395895|gb|CP116246.1| 881 g54403 i0 81.667 3.22077922077922 120 14 50 7 1 116 326091 326206 Nitratidesulfovibrio vulgaris strain L2 chromosome, complete genome blastn 744 93.5 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Nitratidesulfovibrio Nitratidesulfovibrio vulgaris

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;