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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA605033" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 7 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA605033 · 7 ✖

analysis 1

  • blastn · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
582103 582103 PRJNA605033_P_NODE_203461_length_164_cov_2.682171_g201892_i0 PRJNA605033 203461 164 2.682171 4.39876044 Strongyloides papillosus 174720 Nematoda Nematoda 54.7 0.004   NTclustered gi|690018931|emb|LM526224.1| 174720 g201892 i0 100 0.176829268292683 29 0 18 0 29 57 5711 5683 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_contig0000576 blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
1858998 1858998 PRJNA605033_P_NODE_8362_length_478_cov_5.397291_g6872_i0 PRJNA605033 8362 478 5.397291 25.79905098 Rhabditella axei 35559 Nematoda Nematoda 110 2.72e-19   NTclustered gi|157431636|gb|AY602177.2| 35559 g6872 i0 91.25 15.9560669456067 80 7 17 0 398 477 1822 1901 Rhabditella axei strain DF5006 28S large subunit ribosomal RNA gene, partial sequence blastn 7627 110 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Rhabditella Rhabditella axei
8235863 8235863 PRJNA605033_P_NODE_34807_length_265_cov_1.804348_g33240_i0 PRJNA605033 34807 265 1.804348 4.7815222 Heterodera glycines 51029 Nematoda Nematoda 490 4.3299999999999986e-134   NTclustered gi|2868842233|gb|PQ757158.1| 51029 g33240 i0 100 67.5547169811321 265 0 100 0 1 265 186 450 Heterodera glycines strain XJYL3 cytochrome c oxidase subunit I (COX1) gene, partial cds; mitochondrial blastn 17902 490 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Heteroderidae Heterodera Heterodera glycines
9510757 9510757 PRJNA605033_P_NODE_224808_length_157_cov_1.311475_g223239_i0 PRJNA605033 224808 157 1.311475 2.05901575 Heterodera glycines 51029 Nematoda Nematoda 161 2.06e-35   NTclustered gi|18677187|gb|AF345798.1| 51029 g223239 i0 100 0.554140127388535 87 0 55 0 2 88 87 1 Heterodera glycines hypothetical protein Hgg-17 mRNA, partial cds blastn 87 161 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Heteroderidae Heterodera Heterodera glycines
12060825 12060825 PRJNA605033_P_NODE_145210_length_199_cov_0.975610_g143641_i0 PRJNA605033 145210 199 0.97561 1.9414639 Heterodera glycines 51029 Nematoda Nematoda 209 9.68e-50   NTclustered gi|11640610|gb|AF201339.1|AF201339 51029 g143641 i0 99.138 1.00502512562814 116 1 100 0 84 199 207 322 Heterodera glycines HMG-like protein gene, partial cds blastn 200 209 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Heteroderidae Heterodera Heterodera glycines
18434935 18434935 PRJNA605033_P_NODE_41615_length_252_cov_3.129032_g40047_i0 PRJNA605033 41615 252 3.129032 7.88516064 Dirofilaria immitis 6287 Nematoda Nematoda 198 2.77e-46   NTclustered gi|156707|gb|M29733.1|DIRPARAM 6287 g40047 i0 100 8.01984126984127 107 0 42 0 146 252 17 123 D.immitis paramyosin mRNA, partial cds blastn 2021 198 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Dirofilaria Dirofilaria immitis
22258931 22258931 PRJNA605033_P_NODE_17098_length_344_cov_5.705502_g15546_i0 PRJNA605033 17098 344 5.705502 19.62692688 Dirofilaria immitis 6287 Nematoda Nematoda 627 4.2499999999999997e-175   NTclustered gi|156707|gb|M29733.1|DIRPARAM 6287 g15546 i0 99.708 9.80523255813953 342 1 99 0 1 342 126 467 D.immitis paramyosin mRNA, partial cds blastn 3373 627 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Dirofilaria Dirofilaria immitis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;