RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA605033" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA605033 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5685792 5685792 PRJNA605033_P_NODE_189205_length_170_cov_3.088889_g187636_i0 PRJNA605033 189205 170 3.088889 5.2511113 Mesomycoplasma ovipneumoniae 29562 Bacteria Bacteria 54.7 0.004   NTclustered gi|2717001279|gb|CP146003.1| 29562 g187636 i0 100 0.170588235294118 29 0 17 0 79 107 717318 717346 Mesomycoplasma ovipneumoniae strain OCALO_20LO68 chromosome, complete genome blastn 29 54.7 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mesomycoplasma Mesomycoplasma ovipneumoniae
9511592 9511592 PRJNA605033_P_NODE_85968_length_222_cov_2.294118_g84399_i0 PRJNA605033 85968 222 2.294118 5.09294196 uncultured Mycoplasmatota bacterium 658143 Bacteria Bacteria 91.6 4.17e-14   NTclustered gi|2187163482|emb|OV788640.1| 658143 g84399 i0 90 0.315315315315315 70 7 32 0 149 218 300074 300005 uncultured Tenericutes bacterium isolate min17_bin11 genome assembly, chromosome: 1 blastn 70 91.6 1 Bacteria   Bacillati Mycoplasmatota         uncultured Mycoplasmatota bacterium
14612043 14612043 PRJNA605033_P_NODE_71572_length_222_cov_2.983957_g70003_i0 PRJNA605033 71572 222 2.983957 6.62438454 Malacoplasma penetrans 28227 Bacteria Bacteria 82.4 2.51e-11   NTclustered gi|47118307|dbj|BA000026.2| 272633 g70003 i0 86.486 0.333333333333333 74 10 33 0 1 74 435736 435809 Mycoplasma penetrans HF-2 DNA, complete genome blastn 74 82.4 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Mycoplasmoidaceae Malacoplasma Malacoplasma penetrans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;