RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA605033" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA605033 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4972757 4972757 PRJNA605033_P_NODE_112184_length_222_cov_1.759358_g110615_i0 PRJNA605033 112184 222 1.759358 3.90577476 FCB group 1783270 Bacteria Bacteria 124 4.11e-24   NTclustered gi|2874253728|emb|OY969570.1| 412054 g110615 i0 93.902 37.7297297297297 82 5 71 0 141 222 2868361 2868280 MAG: uncultured Gemmatimonadales bacterium isolate MFD02840.bin.c.1 genome assembly, chromosome: 1 blastn 8376 124 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
5685877 5685877 PRJNA605033_P_NODE_199805_length_166_cov_1.343511_g198236_i0 PRJNA605033 199805 166 1.343511 2.23022826 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 274 2.73e-69   NTclustered gi|575456455|gb|CP007128.1| 861299 g198236 i0 99.338 17.0421686746988 151 1 91 0 3 153 3043418 3043268 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 2829 274 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
5686024 5686024 PRJNA605033_P_NODE_21485_length_313_cov_41.384892_g19924_i0 PRJNA605033 21485 313 41.384892 129.53471196 Gaopeijia maritima 3119007 Bacteria Bacteria 158 6.0299999999999986e-34   NTclustered gi|2716997671|gb|CP144380.1| 3119007 g19924 i0 77.947 118.482428115016 263 50 82 7 56 313 1348521 1348262 Gaopeijia maritima strain DH-78 chromosome, complete genome blastn 37085 158 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Gaopeijiales Gaopeijiaceae Gaopeijia Gaopeijia maritima
15173691 15173691 PRJNA605033_P_NODE_237452_length_153_cov_1.355932_g235883_i0 PRJNA605033 237452 153 1.355932 2.07457596 FCB group 1783270 Bacteria Bacteria 111 2.04e-20   NTclustered gi|2874253728|emb|OY969570.1| 412054 g235883 i0 85.185 53.6862745098039 108 16 71 0 46 153 474058 473951 MAG: uncultured Gemmatimonadales bacterium isolate MFD02840.bin.c.1 genome assembly, chromosome: 1 blastn 8214 111 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
20983541 20983541 PRJNA605033_P_NODE_113257_length_222_cov_1.737968_g111688_i0 PRJNA605033 113257 222 1.737968 3.85828896 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 117 6.88e-22   NTclustered gi|575456455|gb|CP007128.1| 861299 g111688 i0 94.667 4.35135135135135 75 4 34 0 1 75 2587595 2587669 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 966 117 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
24807960 24807960 PRJNA605033_P_NODE_159300_length_187_cov_1.578947_g157731_i0 PRJNA605033 159300 187 1.578947 2.95263089 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 217 5.36e-52   NTclustered gi|575456455|gb|CP007128.1| 861299 g157731 i0 87.766 34.7486631016043 188 19 99 4 1 186 3042607 3042792 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 6498 217 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;